Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1620 ATGCTCGACTTAAGAAAACTCAGATTAACATTCACATTTTTCAATCTTAAACCCTCCCTAAACCCTAGATTTCACAGCACAACAAAAACATCACTTCAATTACAACCAAAACCAAAACTTCCCTCAAAATCCACTGTCAAAGAAGCCCAAGCCGCATTACTAGACTATCTTCATTCCACAAGAAGCTTGCAGTTTCTAGACGCGGACAACATGTGCAAAAACTCGCCTTTTTTCATTCAAACCCTTGTTGAAAAAACCCTAAAAAACGAGAAGCTTGTAAACCCTAAGCGGTTGATTTCTCGCTACTTGCGTTACCATCCAATCAATGAATTCGAACCCTTTTTCGAGAGTTTGGGTTTGAAGCCTTCAGAATATGCACCTCTTCTTCCTCGTGACTTGATTTTTCTTAATGATGATCCTCTTATGATGGAGAATTATCATACTCTTTGTAACTATGGGGTTCCAAGGTCCAAAATAGGGAAGATTTTCAAACAAGCGACGGAAGTTTTTAGATTTGAAAATGGGGTTTTGAATTTGAAGATTAAGGCTTATGAGAAGTTGGGTGTTTCGTCTTCGGTTTTAGTGAATGCTGTTGCTGTTAGTCCTGGACTTTTGGTGGGTGATGTTAATGTTGATTTTGTGGAGGTTGTGGATATGTTGAAGGATATTGTTGCAAAGGGTGGTGATGGTGGTGATGTTGATAGTGGTTGGATTAAGTGGGGTTTTTTGGATGAGGTTTCTTGCAATTGGGGCTTGATGCTTGAGCTCTTGTGCTTGCTTTCGGATGCTGGTTTCAGTAAGGAACAGTTGGCGGAGATTATTCGTCGTAGTCCTTGCATTGTTTTTGAGGATTCTGGAGGTAGGACGCTCTCTATGATTGGCTTTTTGACTAAATTTGGATTGTCTGTGAACCAGATTGCCCTTGTGTTTCTCGAGTTTCCGCAGATTCGGATGGTCAAGTTTTTAGCCAACTTGAGAGTGTGTCTTCAGCTTCTGACTGAAATTGAGATGGAAGCTGTGGAGATTGGAAAGATTTTCCAGTCTCACACGTTATTCATTGGTTCCTATACTCTCAAGACAACAAAGAGTTTGCTTGGTTGCTTGAATGTCGGCAAGAAGCGGCTCTGTGCCATAGTGCAGGAAAATCCTCATGAAATGAAGAATTGGATTCTGGGAAGGAGAGTTAAGCCTTTGGTTAGCTTAAGGGAGGAGGAAGAGGAAAAATCAAAAGCGGGGAAGACAGAGTTCTTGCTGCGTTTAGGATATGTGGAAAATTCGAAACAAATGAATACGGCATTTAAGGTGTTCAGAGGTAAGGGAGCTGAACTTCAGGAGAGATTTGATTTTATTGTTAATGCTGGCTTGACACGTGACGATGTTTGTAGAATGATTAGAGTCTCCCCGCAGATTCTTAATCAGACCACAGATAGGGTCAAGATGAAAATTGAGTATCTTATAAAGAAAGGATATTCTGTATCGGATTTAGTGAGTTTTCCATCTTATCTTTCATATAAATCTCTAAGAGTTAAACATAGGTTGTCAATGTATAACTGGCTCATAGACAATGGGGCCGTAGAGCCCGGGCTTGCTCTGAGCACCATAGTTGCATGCACAGACAGAATATTCTTACAAAGTTATGTAAATCGCCATCCCTCTGGCCTTCAAGTTTGGGAAGAGTTGCAAAAAGAAATTCATTGTGAAGATTAA 1707 0.4042 MLDLRKLRLTFTFFNLKPSLNPRFHSTTKTSLQLQPKPKLPSKSTVKEAQAALLDYLHSTRSLQFLDADNMCKNSPFFIQTLVEKTLKNEKLVNPKRLISRYLRYHPINEFEPFFESLGLKPSEYAPLLPRDLIFLNDDPLMMENYHTLCNYGVPRSKIGKIFKQATEVFRFENGVLNLKIKAYEKLGVSSSVLVNAVAVSPGLLVGDVNVDFVEVVDMLKDIVAKGGDGGDVDSGWIKWGFLDEVSCNWGLMLELLCLLSDAGFSKEQLAEIIRRSPCIVFEDSGGRTLSMIGFLTKFGLSVNQIALVFLEFPQIRMVKFLANLRVCLQLLTEIEMEAVEIGKIFQSHTLFIGSYTLKTTKSLLGCLNVGKKRLCAIVQENPHEMKNWILGRRVKPLVSLREEEEEKSKAGKTEFLLRLGYVENSKQMNTAFKVFRGKGAELQERFDFIVNAGLTRDDVCRMIRVSPQILNQTTDRVKMKIEYLIKKGYSVSDLVSFPSYLSYKSLRVKHRLSMYNWLIDNGAVEPGLALSTIVACTDRIFLQSYVNRHPSGLQVWEELQKEIHCED* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1620 568 PANTHER CGI-12 PROTEIN-RELATED 31 561 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 Gene3D Transcription termination factor 3, mitochondrial 73 225 IPR038538 -
Psa3g1620 568 Gene3D Transcription termination factor 3, mitochondrial 288 561 IPR038538 -
Psa3g1620 568 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 561 - -
Psa3g1620 568 Pfam mTERF 258 422 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 Pfam mTERF 434 542 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 SMART mt_12 492 525 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 SMART mt_12 160 190 IPR003690 GO:0003690|GO:0006355
Psa3g1620 568 SMART mt_12 461 491 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1620 Psa-Chr3 146034084 146037095 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Psa3g1620 mTERF 2.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1620 - - lja:Lj1g3v4317450.1 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1620 3 146034084 146037095 Psa3g1620 3 146034084 146037095 ECH