Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1617 ATGGAAAACTTGAACCATGGCGAATCTTCTTCCAATGGAGGCATTCGAAGTCGCTTCGAACTTCTTTCCAAACCACAACTCGTTGATCTTCTCTGCAATCTAGCCTCCCGACATCCTTCCATCGCACAAGAAATCGAAACTCTTACAAATGTTCATTCCCATCGAACGCTTTTCGTTTCCGGCTTGTCCTCCCAAACAAATTCACAAACTTTAAGTCGTGCATTTGAAGAGTATGGAGAAATTGAGAGAGCTACTGTGATTCGTGATAAAGTCACAAAAATATCCAAGAACTATGGATTTGTCACTTACAGAGATGTTAAATCAGTTCATGATGCACTGAGAGAACCTAGGAAATATATTGATGGGTCAGTGGCTAGATGTGATGTAGCTAATGAGCGCCAAGGGAAAACTAGTGGTCCTGATTTTCCCCTCACCAGGAAGATTTATATTGGAGATTTAGCAGCAGGAGTAACAAGCGAAAATCTGCGCAGCGATTTTCAGATGCATGGTGAAATAGAAGAAGCAGTTGCAATGACAAATGATAGATATGGATTCGTTACATTCGCGACAGCAGAGGCTGCAAAGAAGGCTATAGATCACAACAGTCTTCATCCAACATTTGCTGAAGGGAGAAAAAGGATTGTGAAATATGCTAATCCCCGGAGGGGTCCACGAGCTTTACGAGGGAATTCAAGTCCAGAATATGAGCAGGCTCAGGCTGAAGATGATTATGTTGATTATCATTCTCCAGTACCATATGCTCCACCTCCTTATGAAATATATGGTGTTTCCTATCCTCGTGTTTCTGCAGTGACAGATGAATTCGGGACCCGAGGAAACAATATTGATCTGAATGTGATTGCACGAGTTGGCCAAACATTAGAGATTAGAGACCAATCACAGTTTAAGGCAACACAAAATCATTTTCCTCCCATCCAACTGCTGACGCACCAGAACAGTAGTGTGATGGCTAAAGCTTTTCCAGCTGCAATGCAACCTCCTTGTCCGACCATTTTCCGTCCTCCAGCTCCGACTGATCATCGGCTTTTAGATCCGTCTGTTCACTGCCCTCCAGCTCCGATCATGGGTGCCATGAATTTGGGTGCCATGAAATTGGGTGGCAGCTTCTCCTCAAATTTTCGGCAGTCCCGATCGCCCCATTGA 1164 0.4407 MENLNHGESSSNGGIRSRFELLSKPQLVDLLCNLASRHPSIAQEIETLTNVHSHRTLFVSGLSSQTNSQTLSRAFEEYGEIERATVIRDKVTKISKNYGFVTYRDVKSVHDALREPRKYIDGSVARCDVANERQGKTSGPDFPLTRKIYIGDLAAGVTSENLRSDFQMHGEIEEAVAMTNDRYGFVTFATAEAAKKAIDHNSLHPTFAEGRKRIVKYANPRRGPRALRGNSSPEYEQAQAEDDYVDYHSPVPYAPPPYEIYGVSYPRVSAVTDEFGTRGNNIDLNVIARVGQTLEIRDQSQFKATQNHFPPIQLLTHQNSSVMAKAFPAAMQPPCPTIFRPPAPTDHRLLDPSVHCPPAPIMGAMNLGAMKLGGSFSSNFRQSRSPH* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1617 387 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 10 223 - -
Psa3g1617 387 SUPERFAMILY RNA-binding domain, RBD 52 138 IPR035979 GO:0003676
Psa3g1617 387 Gene3D - 42 141 IPR012677 -
Psa3g1617 387 SMART rrm1_1 56 128 IPR000504 GO:0003723
Psa3g1617 387 SMART rrm1_1 147 216 IPR000504 GO:0003723
Psa3g1617 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 220 IPR000504 GO:0003723
Psa3g1617 387 SUPERFAMILY RNA-binding domain, RBD 145 230 IPR035979 GO:0003676
Psa3g1617 387 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 10 223 - -
Psa3g1617 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 199 IPR000504 GO:0003723
Psa3g1617 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Psa3g1617 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 132 IPR000504 GO:0003723
Psa3g1617 387 Gene3D - 142 223 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1617 Psa-Chr3 145888355 145891118 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1617 15 136 C2H2 Transcription Factor Family AT2G19380 34.146 1.36e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1617 K12741 - gmx:100776344 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1617 3 145888355 145891118 Psa3g1617 3 145888355 145891118 ECH