Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1615 ATGGAAAACTTGAACCATGGTGAATCTTCTTCCAATGAAGAGATTCGAAGTCGCATAGGACTTCTTCGCAAACCTCAACTCGTTGATCTTCTTTGTACACTAGCCTTCCAACATCCTTCAATCGCACAAGAAATCAAAACTGTTACGACCGTTCATGACGCGCCTCTCCATCGAAAGCTTTTCGTTCGTCCCTTGTCGACCATTACAAGCTCACAAACTTTACGTCATGCGTTTGAAGAGTATGGAGAAATTGAGGAAGCGATTGTGATTCGTGATAGAGTCACAAGAATATCCAAGAACTATGGATTTGTTACTTACAGAGATATTGAATCAGTTCATGATGCATTGAGAGAACCTAGGAAAGCTATTGATGGAATAGTGACTGTATGTGATGTAGCTCGTGAGCGGAAAACTAGTAGTGATCCTGAATCTGATTCTTCCCTGAGGAGGAATCTTTATGTTGGAGATTTACCAGGAGGAGTGACAAGTGAAAATCTGCTCAGGGATTTTCAGAAGCATGGTGAAATAGAGAAAGCAGTTGTAATTGGTAGATATGGATTCGTTACATTCGCGACAGCAGAGGCTGCAAAGAAGGCTATAGATTACAACACTCTTCATCCAACATTTGCTCAAGGGAGAAAAAGGATTGTAAACTATGCTCATTGGCAGAGCAGTCGGCCGCCTTTAAGTACGAGTCCAAGTCGGGAATACGAGCAGTCTGAAAATGCTTATGATGATTCTCCACCTCCTTATCCAAGACTATTCACTGCAGATTCTCCTTATCCTCGTGTTTATGCAATGACAGACAGATTTGGGAACCAGTATTACTATGACTATTCATATCCCTACTAA 852 0.4155 MENLNHGESSSNEEIRSRIGLLRKPQLVDLLCTLAFQHPSIAQEIKTVTTVHDAPLHRKLFVRPLSTITSSQTLRHAFEEYGEIEEAIVIRDRVTRISKNYGFVTYRDIESVHDALREPRKAIDGIVTVCDVARERKTSSDPESDSSLRRNLYVGDLPGGVTSENLLRDFQKHGEIEKAVVIGRYGFVTFATAEAAKKAIDYNTLHPTFAQGRKRIVNYAHWQSSRPPLSTSPSREYEQSENAYDDSPPPYPRLFTADSPYPRVYAMTDRFGNQYYYDYSYPY* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1615 283 Gene3D - 52 137 IPR012677 -
Psa3g1615 283 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 8 224 - -
Psa3g1615 283 Gene3D - 138 248 IPR012677 -
Psa3g1615 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 222 IPR000504 GO:0003723
Psa3g1615 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 203 IPR000504 GO:0003723
Psa3g1615 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 118 IPR000504 GO:0003723
Psa3g1615 283 MobiDBLite consensus disorder prediction 225 252 - -
Psa3g1615 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 125 IPR000504 GO:0003723
Psa3g1615 283 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 8 224 - -
Psa3g1615 283 SUPERFAMILY RNA-binding domain, RBD 57 138 IPR035979 GO:0003676
Psa3g1615 283 SUPERFAMILY RNA-binding domain, RBD 150 231 IPR035979 GO:0003676
Psa3g1615 283 SMART rrm1_1 151 218 IPR000504 GO:0003723
Psa3g1615 283 SMART rrm1_1 59 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1615 Psa-Chr3 145873292 145875019 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1615 13 145 C2H2 Transcription Factor Family AT2G19380 31.343 1.06e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1615 K12741 - gmx:100776344 193.356