Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1601 ATGTTTCTGTGGATTCGAAATGTACTGTGTGCTTGCTCAAGCAACAACACTATTGACATGATTGGCGATATTAACATTGATGAATTTGATACTGATCCTTTAGGGTGGTCAATGAGAGTACTTAAGCATCCATTCGGTGAAGTCTCCATGGCTGCGGTACAGGCAAATGAAAATATGGAAGGTATCAGCGAGCTTGACATTGGGGACATAGCACTTTTTGTTGGAATTTATGATGGCCAAAATGGCACCTTTGCTTCCGAATTTCTGAGTGATAGACTCGTCTCGGCTCTACTATGTGATATTGATCTGAATGGTCAAAATATGTCTGAAGATATTCTGAGGCAAGTTGTTGATAAAATGGAGAAAAAGTTTATGGAAAAAGCTGACGAGTTACATGACCATCAGCCGGGGCGAGTTCTAGCTAGTTCTAGCTGTTTGTTTTGTATTGTATGGAAAGGGAAACTGTATGTCGCTAATGTTGGCGACTCCCGTGCTGTAATGGGTTCTTTGGGTCTATTTGGTAGACTCCGTGTTCAGCAGTTGGTCAGAGATCACAATGCTGGTAACGAGCATATTAAAGAAGAACTCATGAGATTGCATCAGGATGATCCGAATATTGTGATGTATATCCGTGACGCATGGCGTGTTCGAGGGGTAAGCGAGGTGAGCAGATGTATAGGAAATGCATATTTGAAGCGGGAGCCTTTCACTTTAGACCCGTCCTTCAATGTCCCGCAGACAGAACTTGCGCCTTCTGATTTTACCCGACCTTTGCTATCAGCAGAACCCGAGACATACTCAAGAGAATTAGACAGTGGGAAGTTCATCATATTTGGATCCGGTGGACTTTGGAAATTGCTGACAAATGAGGAAGCGGCTAAAATTGTGAATACCAATCCACGACAAGGAATTGCAAAGAGACTTGTGATGATTGCTCTAAAGATTGCAGCAAGAAAAAATAATATGACCTACAGTGAGCTTTTGGCGGTTCCTAGGGGTCCAAGGCGTGAGTATCATGACAATATCGTTGTGACGGTTGTATTTCTCGACAAAAGGCCAGATGTGATGACCCCACGGCCAAGGATCAATTGCTTCAGAAGCTTCTTTGACACGGCTCTTCGTTCAAATTTTCACTATCTGTATGCTCATAATACAGCTTTTTGTTTGGGTATGGGAAATTATTCCTAG 1188 0.4268 MFLWIRNVLCACSSNNTIDMIGDINIDEFDTDPLGWSMRVLKHPFGEVSMAAVQANENMEGISELDIGDIALFVGIYDGQNGTFASEFLSDRLVSALLCDIDLNGQNMSEDILRQVVDKMEKKFMEKADELHDHQPGRVLASSSCLFCIVWKGKLYVANVGDSRAVMGSLGLFGRLRVQQLVRDHNAGNEHIKEELMRLHQDDPNIVMYIRDAWRVRGVSEVSRCIGNAYLKREPFTLDPSFNVPQTELAPSDFTRPLLSAEPETYSRELDSGKFIIFGSGGLWKLLTNEEAAKIVNTNPRQGIAKRLVMIALKIAARKNNMTYSELLAVPRGPRREYHDNIVVTVVFLDKRPDVMTPRPRINCFRSFFDTALRSNFHYLYAHNTAFCLGMGNYS* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1601 395 Gene3D - 37 354 IPR036457 -
Psa3g1601 395 SMART PP2C_4 40 347 IPR001932 -
Psa3g1601 395 CDD PP2Cc 62 349 IPR001932 -
Psa3g1601 395 Pfam Protein phosphatase 2C 73 319 IPR001932 -
Psa3g1601 395 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 19 352 - -
Psa3g1601 395 ProSiteProfiles PPM-type phosphatase domain profile. 47 349 IPR001932 -
Psa3g1601 395 SUPERFAMILY PP2C-like 71 351 IPR036457 -
Psa3g1601 395 PANTHER ALPHABET, ISOFORM E-RELATED 19 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1601 Psa-Chr3 144933023 144934709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1601 34 350 PP2C-type Phosphatase Gene Family AT5G06750 45.652 1.10e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1601 K01102 - pvy:116121639 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1601 3 144933023 144934709 Psa6g2864 6 234223382 234225989 PCT