Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1588 ATGGGGGAGGAAAGTTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCAGAACCACCAACTGGGTCCATAACCAATGAGGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGCGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGCATTCTACCTCAGCCTTATGCTCAAGTTCATCAAATTCTACCAGAGCCTGCGCATCATATTTATATCCCACCTGAAGCTCGCAATATCTCTATTGAATTGAACAATTTTTTGGTCAATTCGGGTAATGGTACGGGGTTACAGGCTGGAGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGAGCCGTTGAAAGCGTGTGAAAACAACAATGGTGTTATGGAGGATGAGATGTCGCAGAAGAAGGATGATGTTGAAAAGACTGGTGGCAATGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACCTGTCCAAGGAGCCTGTTTTGACTTGTTGCGGTCATCTGTTTTGTTGGCAGTGCTTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCGGTTTGCAAAGGGGAGGTGACAATTAAGAGTGTTACCCCCATCTATGGTCGAGGGAACAATGCTCGTGTTCTTGAGGAGGATTCCACTCTTAAAATTCCTCCTAGGCCGCAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAATGCTTCTGCACTCCCTGTAGAGGAGGTGATTCGGCGTCTTGGAAACAGAATTGATCTCACTCGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGAATCCTGTGGCACCACCGGAAGATGTTGCAGGTTTGAATCAGAACAATGTTAATGGCGCTGACTTGGGAGGGGATCACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCCACACTGTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTAGGAAGAAACCAAGAACAACCACCTACTTCAGTTGATGACAGAGACTCCTTTTCAAGCATTGCCGCCGTCATAAATTCGGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCTAGGAGGAGAGCTGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTCTGAACTAA 1368 0.4649 MGEESSDAMNLDLNLGPDPEPPTGSITNEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRILPQPYAQVHQILPEPAHHIYIPPEARNISIELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEEPLKACENNNGVMEDEMSQKKDDVEKTGGNDGDFFDCNICLDLSKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSVTPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEVIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQNPVAPPEDVAGLNQNNVNGADLGGDHRRVQSLLLRRSQSHRATLSSLSSALTSAERLVEAYFRSNPLGRNQEQPPTSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRADASRLSDVDSGDSRAPRRRRLN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1588 455 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Psa3g1588 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 433 IPR045103 GO:0005783|GO:0006511|GO:0061630
Psa3g1588 455 CDD RING-HC_AtRMA_like 172 216 - -
Psa3g1588 455 SMART ring_2 174 214 IPR001841 -
Psa3g1588 455 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Psa3g1588 455 MobiDBLite consensus disorder prediction 426 455 - -
Psa3g1588 455 PANTHER OS01G0830200 PROTEIN 13 433 - -
Psa3g1588 455 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Psa3g1588 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 242 IPR013083 -
Psa3g1588 455 Coils Coil 140 160 - -
Psa3g1588 455 MobiDBLite consensus disorder prediction 1 21 - -
Psa3g1588 455 SUPERFAMILY RING/U-box 170 227 - -
Psa3g1588 455 MobiDBLite consensus disorder prediction 427 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1588 Psa-Chr3 143964104 143967469 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1588 1 446 C3H Transcription Factor Family AT3G58030 51.188 1.57e-133 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1588 K10666 - gmx:100811099 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1588 3 143964104 143967469 Psa3g1588 3 143964104 143967469 ECH