Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1584 ATGGAACTAGCTTTGAGCTTAGGCGACACACCAAAACCATTCTCTTTCTTCCAAAAGTCCTTCGACCAAAAAAGCACTTCCTCAGATCCACTTATCCAACTCAACCTTCTTCCTTCAACGCCCGTTCTTCGTCCCCATCCTTCTCCACCAAATCTTCGGATTCCATGGCTCAATGATGCACTCGGAGTTGAACCGGCGAGGATGTCAGATGTGAATCGGTTCCGGTTGGCGGCGTCGGTCGAAGATAATACAGACGAAGGAGCTGCAGCTTCATCCCCGAATAGCGCGGTTTCATCTTTTCAGATGGATTTCTCTATCATGAACGGTAATGGAAATGCTGCTGAGGGTGCAACAAGAAATAGTAGTCGTGAGAGGGGTGCGGATAGCGATGACGAAGAAAACGGTTCCACTAGAAAGAAACTCAGACTCAGTAAAGAACAGTCAGCTTTCCTTGAAGATAGCTTTAAAGAACACACCACTCTCAATCCAAAACAGAAACTTGCTCTTGCAAAACAGTTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTGAAAAAATGTTGTGAGACACTAACAGAAGAGAATAGAAGATTACAAAAGGAACTGCAAGAGTTAAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAGCGTCCGGCTACTACTCTCACTATGTGTCCATCTTGCGAAAGAGTTGCCACCAACACTACCGGGAGCGGCGCCGGGGCTAAACAAACCGCCTCAATCACCGCCGGAGGGCGCTGTGAACAATAA 831 0.4585 MELALSLGDTPKPFSFFQKSFDQKSTSSDPLIQLNLLPSTPVLRPHPSPPNLRIPWLNDALGVEPARMSDVNRFRLAASVEDNTDEGAAASSPNSAVSSFQMDFSIMNGNGNAAEGATRNSSRERGADSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTEENRRLQKELQELRALKTSQPFYMQRPATTLTMCPSCERVATNTTGSGAGAKQTASITAGGRCEQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1584 276 ProSiteProfiles 'Homeobox' domain profile. 134 194 IPR001356 GO:0003677
Psa3g1584 276 PANTHER - 22 270 - -
Psa3g1584 276 SUPERFAMILY Homeodomain-like 129 195 IPR009057 -
Psa3g1584 276 MobiDBLite consensus disorder prediction 256 276 - -
Psa3g1584 276 CDD homeodomain 138 195 IPR001356 GO:0003677
Psa3g1584 276 MobiDBLite consensus disorder prediction 121 143 - -
Psa3g1584 276 Pfam Homeobox associated leucine zipper 194 228 IPR003106 GO:0006355|GO:0043565
Psa3g1584 276 SMART halz 194 237 IPR003106 GO:0006355|GO:0043565
Psa3g1584 276 Gene3D - 142 192 - -
Psa3g1584 276 Coils Coil 200 230 - -
Psa3g1584 276 MobiDBLite consensus disorder prediction 113 143 - -
Psa3g1584 276 ProSitePatterns 'Homeobox' domain signature. 169 192 IPR017970 GO:0000981|GO:0006355
Psa3g1584 276 SMART HOX_1 136 198 IPR001356 GO:0003677
Psa3g1584 276 Pfam Homeodomain 138 192 IPR001356 GO:0003677
Psa3g1584 276 Pfam HD-ZIP protein N terminus 67 100 IPR006712 GO:0005634
Psa3g1584 276 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 22 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1584 Psa-Chr3 142699793 142701438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1584 128 251 Homeobox Transcription Factor Family AT4G37790 83.065 2.63e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa3g1584 Homeodomain 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1584 K09338 - qsu:112028347 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1584 3 142699793 142701438 Psa3g1584 3 142699793 142701438 ECH
Psa3g1584 3 142699793 142701438 Psa6g2060 6 139584229 139586300 PCT