Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1577 ATGTTGTGTTGCGGAGGTGCAGAAGAAGAGACAACCGGCCCGCCTGCAAACCAATACACTGCACCGTCAAGAGGGGGTAACAACGCGTATGGTGGAGGTGGAGGCAATGATAGAGGAGAGCCAAGGAGCAATATTACCAAAAGTGGTGGACCGCAAAAAGTATTACCGATCGAGATACCATCTATAACATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTTCAAAGGCTTTCATTGGTGAAGGTTCCTATGGTAGGGTTTACTATGCAAAATTGAGTAATGGTACTGAAGCTGCAATTAAAAAACTAGATACCAGTTCTTCGCCTGATCCCGACACGGATTTTGCTGCTCAGTTATCAACTGTTTCAAGACTCAAGCATGACAATTTTGTGGAGTTGACTGGATATTGTTTAGAAGCAGACAACAGAATTTTGGTTTATCAATTTGCAAGTTTGGGTTCTTTGCATGATGTATTACACGGAAGGAAGGGTGTACAAGGTGCTGAACCCGGCCCAGTCTTAAACTGGAACCAGAGAGCGAGAATTGCATTTGGTGCAGCAAAAGGCCTAGAGTTTCTTCATGAAAAAGTCCAGCCGTCTATAGTTCATCGCGACGTTCGATCCAGTAATGTGTTGTTGTTCAATGAGTATGAAGCCAAGATTGCTGATTTCAGCTTGACGAATCAGTCTTCTGACACCGCAGCTCGGCTTCATTCTACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGGCAGATAACACAAAAAAGTGATGTGTATAGTTTCGGAGTTGTGCTTTTAGAACTCTTGACCGGAAGAAAACCGGTAGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTTACTTGGGCAACTCCAAGATTGAGTGAGGATAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTATCCTCCAAAGGCAATTGCTAAGTTGGCAGCGGTAGCAGCACTGTGTGTTCAATATGAAGCTGATTTTCGGCCAAACATGACGATTGTAGTAAAAGCTCTTCAGCCACTTCTCAATGCAAAACCACCTGGTCCTGACCCTAATGCTTGA 1104 0.4366 MLCCGGAEEETTGPPANQYTAPSRGGNNAYGGGGGNDRGEPRSNITKSGGPQKVLPIEIPSITLDELNRLTGNFGSKAFIGEGSYGRVYYAKLSNGTEAAIKKLDTSSSPDPDTDFAAQLSTVSRLKHDNFVELTGYCLEADNRILVYQFASLGSLHDVLHGRKGVQGAEPGPVLNWNQRARIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNEYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPDPNA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1577 367 MobiDBLite consensus disorder prediction 1 52 - -
Psa3g1577 367 Gene3D Phosphorylase Kinase; domain 1 48 150 - -
Psa3g1577 367 ProSiteProfiles Protein kinase domain profile. 74 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1577 367 Pfam Protein tyrosine and serine/threonine kinase 79 352 IPR001245 GO:0004672|GO:0006468
Psa3g1577 367 PANTHER OS03G0226300 PROTEIN 1 366 - -
Psa3g1577 367 Gene3D Transferase(Phosphotransferase) domain 1 152 360 - -
Psa3g1577 367 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Psa3g1577 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 202 214 IPR008266 GO:0004672|GO:0006468
Psa3g1577 367 SMART tyrkin_6 74 352 IPR020635 GO:0004713|GO:0006468
Psa3g1577 367 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Psa3g1577 367 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1577 Psa-Chr3 142098464 142101257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1577 38 359 Receptor kinase-like Gene Family AT3G58690 43.865 2.16e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Psa3g1577 PK_Tyr_Ser-Thr 3.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1577 - - gmx:100786291 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1577 3 142098464 142101257 Psa3g1577 3 142098464 142101257 ECH
Psa3g1577 3 142098464 142101257 Psa6g2031 6 135967605 135973341 PCT