Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1567 ATGGCTCCTGGAGGCAGCATTTTCAAAGAAGTTCTCGAGTCTCACCTGATGTCTTCGGATTATGAGACCGGCAAGGCTAAATCTGAGGCTAAGATTAACAGTACACTTACAAAGTCTACTAGTGTTGGGTTGAATGGAAAGAACGGAACTAGTTCGAAGAATGGCGTGCACGACTTACTCGGGTGCCCTGTCTGCAAGAATTTGATGTATCCTCCCATTCACCAGTGTCCAAATGGCCATACATTATGTTCTAGTTGTAAGATAGAAGTCCATAATCTCTGCCCAACATGTCATCATGATCTTGGGAACATAAGGTGTTTGGCTTTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCCGATATCAGAGTCTAGGTTGTAACGATATTTTTCCTTATTATGTTAAGCTTAAGCACGAGCAAAGTTGCGGATTTCGTCCATACAATTGCCCCTACGCTGGGTCTGAGTGTTCTGTGATGGGTGACATTCCAACTCTCGTTGCTCATCTCAAAGATGAACACAAGGTCGACATGCACGATGGATTCACCTTCAATCATCGATACGTCAAAACAAATCCACACGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAACTGTTATGGGCGACATTTCTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACAGCTCCGGTTTTCATGGCCTTCTTACGGTTTATGGGCGACGACAACGAGGAGAAGAAATTCAGCTACAGTTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCGCGGAGCATCCGCGACAGTCACAGTAAAGTTAGAGATAGTCAAGATGGACTTATAATTCAGAGAAATCAAGCCCTTTATTTTTCTGGCGGTGATAAACAGGAGTTGAAGTTGAGAATCACGGGTCGAATATGGAAAGAAGATTGA 933 0.4427 MAPGGSIFKEVLESHLMSSDYETGKAKSEAKINSTLTKSTSVGLNGKNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSSCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYVKLKHEQSCGFRPYNCPYAGSECSVMGDIPTLVAHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGRHFCLHFEAFQLGTAPVFMAFLRFMGDDNEEKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1567 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Psa3g1567 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 309 - -
Psa3g1567 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 168 IPR013083 -
Psa3g1567 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Psa3g1567 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 1 309 - -
Psa3g1567 310 SUPERFAMILY TRAF domain-like 115 307 - -
Psa3g1567 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Psa3g1567 310 SUPERFAMILY RING/U-box 55 104 - -
Psa3g1567 310 CDD RING-HC_SIAHs 62 97 - -
Psa3g1567 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Psa3g1567 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 114 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1567 Psa-Chr3 141270734 141274154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1567 1 310 C3H Transcription Factor Family AT2G41980 77.419 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1567 K04506 - gmx:100813966 596.275