Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1532 ATGGCTACTACGCTTCTTCTCCGAAATTCTTCCTCTTCATCTTCCAAACTTCTTTCTCCTCTTCTATTCTCCTCTCAATTTCACACTTCCCTCACTCGTTCACCTCAATCTCAATCCCCTCTCACCAATGACAATACCACCTCATCTCCTTCTTCTTCAAACCCTTGGTGGAGATCCATGGCTACTTTCACCAGAACGAAACCTCATGTTAACGTTGGGACTATTGGTCACGTAGATCACGGCAAAACCACACTCACTGCTGCAATCACCAGAGTACTTGCTGATGAAGGGAAAGCTAAGGCTATAGCTTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAAAGAGGAATTACAATTGCTACGGCACATGTTGAGTATGAGACTGCAAAACGACATTATGCACATGTAGACTGTCCTGGACATGCAGATTATGTCAAAAATATGATTACCGGAGCTGCCCAAATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTGCCGTCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTGGATGATCCAGAATTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGACATCCCTATCATTAGAGGTTCAGCACTGTCTGCTTTAAATGGTACAAACGAAGAGATTGGCAGTAAGGCCATTCTCAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTTCGTCAGCTTGATAAGCCTTTCTTGATGCCCATTGAAGATGTGTTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGCCGTGTTGAACAAGGGATCATCAAAGTTGGTGACGAAGTTGAGATTTTAGGTCTGATGCAGGGTGGTCCTCTGAAAACAACCGTTACTGGAGTTGAGATGTTCAAGAAGATATTGGATCAAGGACAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGACATTCAACGCGGTCAGGTCATTGCTAAACCTGGTTCTGTAAAAACTTCCAAGAAATTTGAGGCAGAGATATACGTGCTCACAAAGGATGAGGGTGGTCGACACACTGCTTTCTTTTCTAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCGGAAAATGTAAAAATGGTTATGCCTGGAGACAATGTTACTGCCGTGTTTGAATTGATTTTACCTGTTCCTCTTGAAACAGGGCAAAGATTTGCTTTGAGAGAGGGTGGCAGAACAGTTGGTGCAGGTGTGGTATCAAAAGTGCTGAGCTGA 1368 0.4371 MATTLLLRNSSSSSSKLLSPLLFSSQFHTSLTRSPQSQSPLTNDNTTSSPSSSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALNGTNEEIGSKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEILGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELILPVPLETGQRFALREGGRTVGAGVVSKVLS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1532 455 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 263 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PRINTS GTP-binding elongation factor signature 188 197 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 Pfam Elongation factor Tu GTP binding domain 67 260 IPR000795 GO:0003924|GO:0005525
Psa3g1532 455 PANTHER ELONGATION FACTOR TU 17 454 - -
Psa3g1532 455 CDD EF_Tu 68 262 IPR041709 -
Psa3g1532 455 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 364 454 IPR009001 -
Psa3g1532 455 CDD EFTU_II 270 358 IPR033720 -
Psa3g1532 455 MobiDBLite consensus disorder prediction 32 56 - -
Psa3g1532 455 Hamap Elongation factor Tu [tuf]. 58 455 IPR004541 GO:0003746|GO:0005525|GO:0006414
Psa3g1532 455 TIGRFAM small_GTP: small GTP-binding protein domain 70 206 IPR005225 GO:0005525
Psa3g1532 455 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Psa3g1532 455 CDD EFTU_III 361 450 - -
Psa3g1532 455 PANTHER ELONGATION FACTOR TU-RELATED 17 454 - -
Psa3g1532 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 278 IPR027417 -
Psa3g1532 455 Pfam Elongation factor Tu domain 2 284 354 IPR004161 GO:0005525
Psa3g1532 455 Gene3D - 59 262 IPR027417 -
Psa3g1532 455 Pfam Elongation factor Tu C-terminal domain 359 453 IPR004160 -
Psa3g1532 455 SUPERFAMILY Translation proteins 264 360 IPR009000 -
Psa3g1532 455 Gene3D Translation factors 265 395 - -
Psa3g1532 455 TIGRFAM EF-Tu: translation elongation factor Tu 59 454 IPR004541 GO:0003746|GO:0005525|GO:0006414
Psa3g1532 455 Gene3D Translation factors 399 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1532 Psa-Chr3 139295794 139301026 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1532 65 453 Eukaryotic Initiation Factors Gene Family AT5G60390 30.345 1.26e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1532 K02358 - gmx:100791600 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1532 3 139295794 139301026 Psa3g1532 3 139295794 139301026 ECH