Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1514 ACTCATTAACCGAATACAGGTTCCTTATCACAACTTCTTTAAACTATGCGTTTGAACATTCCTTTAAGATGATCTATCGTGAAGTGTTTAAGGGAGTGTATGTATCAAAACTGGAGCGACGTTCATGCTCATTTTCTTCTTTGGATCAAATGACGTCCTTTTTTGATGGTCTGTTAGGTCTTGCACCTCCCGGGGAACAAATGGAGTATTCGTCAGGACTTGATCGTCTGTTCCTGGAGGAAGACGTGGAAAACTCCTATTGCTTCAATGACAACAACGACTTACCGTTGGACGACAAACTGCGCTTTCAACTGTCATCCATCTCTCGCCGGTGCACCGTGCTACCTCCCTTCCTGAACTCCACCTTCATAAGAGTTTCAAAGAGCATCCATACACATCCACCTCCAGCGTTGTCTATCATACTCCAGTGCAACTGTGCAAATATACTAGAAGGAACCATGTCGAGGATATGTGTGAAGAATCTCCCTAAATACGCTGCTGAGGATCAACTAAAAGAATTATTTTCTCAGAAAGGAGAAATAACCGATGTCAAGCTTATGCGTACCAAAAACGGTAAAACTCGCCAATTTGCTTTTATCGGATTTCGTACAGACCAGGAGGCTCAGGAAGCGATTCGATATTTCAATAGATCTTACCTCGGCACACTTAGAATTACTTGTGAGGAGGCTCAAAAACAAGGTGATGCAAAACTTCGTCGTCCGTGGAGTAGACATTCTACAAAAATAGACAATAAAGTGGTCACTCCGGAGGCGAACAATCATGCTAAAGCTAAAGGGCAAGGAGACTATTCTAAGGACATTGATGACCCGAAGCTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCAAAGTCTAAGTTGTGGGGAAATGATACTTCGGTTGTATCCAATGATGGCAACAACCAAGCAACATTGAATAAGGAGACCAAAGGTACATCAGTTGCAAACCATCATATCTTAAGCGTCTCACAAGTAGATGGATTACCAAATAATCTTGAATCCGACAAGTCGCACGAGCTTAAGCATGATAAAGTGATTTCTGATATGGATTATTTCAAGAGTAAAGTGACAACGGAGTGGTCTGATTCTGAAAGCAGTGATGATGAAAACGATGACGGCAACAGCGATTTGGCATCTTCTGACGATGATGACAAAGATAGCCACATACATGTTAGTGAACATGATGAAAATTGTGGTAATAACCCTTCTCAAAGAACCCCAAAAAGTGGTGCTCAAAAGTTAGATTTAGAGGGCCAAGAAGATACTTTTAGAGAGGATGTTGCCAATGATAAGTCTCAAGTGAATGCAACTGAGGAAGGGGGGCAGTTATCCAATCCAGAAGATAAGAAAGGAGTTTCTGAGTCATGTCGACTGTTTGTCCGAAATCTGCCATATACAACCAGCGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGTAGTGTCTCACAGGTTCATTTAGTTGTTGATAAGGAGACAAAACGATCCAAGGGAATAGCTTATATTCATTTTTCAGTTCCAGAGTTTGCAGCCAGGGCGTTAGAAGAGTCAGACAATTCAATCTTCCAGGGGAGATTATTGCATGTTATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAAGGACCAAGACTCTAAAACTCTCAAACAACGAAGAGAGGAAGAGAGGAAAGCAGCTGAGGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAGTCGTAGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTAATGGATCGAGAAGCAGATGATCTTGCTGTACGCATTGCTCTGGGAGAAACTCAAGTAATTTCAGAAACAAAAAATGCATTTAAAAAAGCTGGAGTGAATGTGGAGTCTCTGGAAGAACTTACGAAGGGTAAAGTTGAAGGCGTGAAAAGAAGTAACCATGTACTTTTAGCAAAAAACTTGCCCTATGGTTCTACGGAAAGTGAACTTGCAAAGATGTTTGGGAAATTTGGTAGCTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTGTCTTCCTTGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCTGACATTCTTATCCCAAAATCAACATCTGAAAATAATGAGGTGAATGGTGGAATTGGTGAAAAGGATGTCAAGCGACTGATACTAGAGCAAGACGTGGAAAGAATATCAGATATGGATGTTGATCCGGATAGAATAGAGGCTCGGTCTCTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAGGCAACATTTCAGTGAAAACATGAAAGAGGGGCGGATTTTGAGTGTCAAGGTGAAGAAGCATTTAAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAATTTGACTCTGCAGAGACTGCCACGAGTGTTCGTAGCAATTTGCAGGGGACTGTTTTGGACAGTCATGCTCTTAATTTACAACCTTGTCATGTCAAGGATGGTGGTAAAGTAGTAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGCCCGTTTGGCCAGATTAAAAGCTTAAGATTGCCAATGAAGTTTGGAAATCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCGCAAAATGCTCTTACAGCACTTTCAAGCACTCACTTGTATGGAAGACATTTGGTGATAGAGCGAGCGAAAGAAGGTGAGAGTTTGGAGGAACTACGTGCTCGAACTGCTGCTCAATTTAATGAACACAGTGGATTTCAAGATGCTAATTCATCCAAGAAAAGGAAGGCCTTTAGCATGCTAGATGAAGAAAATATGAAGTTTGAAAGGTTTGATTAG 2996 0.4122 SLTEYRFLITTSLNYAFEHSFKMIYREVFKGVYVSKLERRSCSFSSLDQMTSFFDGLLGLAPPGEQMEYSSGLDRLFLEEDVENSYCFNDNNDLPLDDKLRFQLSSISRRCTVLPPFLNSTFIRVSKSIHTHPPPALSIILQCNCANILEGTMSRICVKNLPKYAAEDQLKELFSQKGEITDVKLMRTKNGKTRQFAFIGFRTDQEAQEAIRYFNRSYLGTLRITCEEAQKQGDAKLRRPWSRHSTKIDNKVVTPEANNHAKAKGQGDYSKDIDDPKLQDFLQVMQPRAKSKLWGNDTSVVSNDGNNQATLNKETKGTSVANHHILSVSQVDGLPNNLESDKSHELKHDKVISDMDYFKSKVTTEWSDSESSDDENDDGNSDLASSDDDDKDSHIHVSEHDENCGNNPSQRTPKSGAQKLDLEGQEDTFREDVANDKSQVNATEEGGQLSNPEDKKGVSESCRLFVRNLPYTTSEEELEEHFSQFGSVSQVHLVVDKETKRSKGIAYIHFSVPEFAARALEESDNSIFQGRLLHVMPAIPRHSNNEENKDQDSKTLKQRREEERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLMDREADDLAVRIALGETQVISETKNAFKKAGVNVESLEELTKGKVEGVKRSNHVLLAKNLPYGSTESELAKMFGKFGSLDKIILPSTKTLALVVFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDILIPKSTSENNEVNGGIGEKDVKRLILEQDVERISDMDVDPDRIEARSLFVKNLNFKTTDESLRQHFSENMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSAETATSVRSNLQGTVLDSHALNLQPCHVKDGGKVVKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDANSSKKRKAFSMLDEENMKFERFD* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1514 997 Gene3D - 771 860 IPR012677 -
Psa3g1514 997 Gene3D - 864 977 IPR012677 -
Psa3g1514 997 Gene3D - 647 746 IPR012677 -
Psa3g1514 997 SMART rrm2_1 463 536 IPR003954 GO:0003676
Psa3g1514 997 SMART rrm2_1 155 227 IPR003954 GO:0003676
Psa3g1514 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 540 IPR000504 GO:0003723
Psa3g1514 997 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 154 975 - -
Psa3g1514 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 874 950 IPR000504 GO:0003723
Psa3g1514 997 CDD RRM6_RBM19_RRM5_MRD1 874 948 - -
Psa3g1514 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 654 726 IPR000504 GO:0003723
Psa3g1514 997 MobiDBLite consensus disorder prediction 369 385 - -
Psa3g1514 997 MobiDBLite consensus disorder prediction 402 416 - -
Psa3g1514 997 MobiDBLite consensus disorder prediction 364 458 - -
Psa3g1514 997 PANTHER RNA-BINDING PROTEIN 19-RELATED 154 975 - -
Psa3g1514 997 MobiDBLite consensus disorder prediction 386 401 - -
Psa3g1514 997 Gene3D - 147 239 IPR012677 -
Psa3g1514 997 SMART rrm1_1 875 946 IPR000504 GO:0003723
Psa3g1514 997 SMART rrm1_1 463 536 IPR000504 GO:0003723
Psa3g1514 997 SMART rrm1_1 655 722 IPR000504 GO:0003723
Psa3g1514 997 SMART rrm1_1 775 853 IPR000504 GO:0003723
Psa3g1514 997 SMART rrm1_1 155 227 IPR000504 GO:0003723
Psa3g1514 997 SUPERFAMILY RNA-binding domain, RBD 870 953 IPR035979 GO:0003676
Psa3g1514 997 CDD RRM4_RBM19_RRM3_MRD1 654 725 - -
Psa3g1514 997 Gene3D - 429 574 IPR012677 -
Psa3g1514 997 SUPERFAMILY RNA-binding domain, RBD 761 857 IPR035979 GO:0003676
Psa3g1514 997 SUPERFAMILY RNA-binding domain, RBD 150 242 IPR035979 GO:0003676
Psa3g1514 997 SUPERFAMILY RNA-binding domain, RBD 455 545 IPR035979 GO:0003676
Psa3g1514 997 CDD RRM5_RBM19_like 774 855 IPR034423 -
Psa3g1514 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 774 857 IPR000504 GO:0003723
Psa3g1514 997 SUPERFAMILY RNA-binding domain, RBD 651 739 IPR035979 GO:0003676
Psa3g1514 997 CDD RRM1_MRD1 154 229 - -
Psa3g1514 997 MobiDBLite consensus disorder prediction 543 570 - -
Psa3g1514 997 MobiDBLite consensus disorder prediction 420 438 - -
Psa3g1514 997 CDD RRM3_RBM19_RRM2_MRD1 463 536 - -
Psa3g1514 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 659 717 IPR000504 GO:0003723
Psa3g1514 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 534 IPR000504 GO:0003723
Psa3g1514 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 222 IPR000504 GO:0003723
Psa3g1514 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 876 943 IPR000504 GO:0003723
Psa3g1514 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 776 850 IPR000504 GO:0003723
Psa3g1514 997 MobiDBLite consensus disorder prediction 538 570 - -
Psa3g1514 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1514 Psa-Chr3 138314058 138326809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1514 767 967 Eukaryotic Initiation Factors Gene Family AT1G49760 29.279 1.93e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1514 K14787 - gmx:100798742 1163.67