Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1493 ATGAAAATCTTTTTGCCTCAAAATCTCGATAAGAGGAAGAGTCTTTTCACTTTCAAAATCGAATTTCAATCTCTTACGCATTTCAAATTGAACTTCAACACCATTTTGATTCTCAGAAAAACCATAACCTTTAATCTAATGGACCGCAAGGAAACTTTGAAGAGGAAATTCGATTTCACCGATGATGACGAATCAACCGATGAAGTTCTTCACGAAAACTCTCGCCGTCTAACTCTCGCCGACGATATTACTAACCGCATAGATCTGTTAAACTCGGTTTTTTCATCGTCCGATCCGGATATCGGTTCTGCTCAAAATGCTCTTGTTTTTCTTTCGGAATACGCCAAAGATGATGATATGGTGGATTCTATGGTAGTTTGTGGTGTTGTTCCTGCTCTAGTGAAGGTTTTGCGTATGGTGTCTAATGGAGGTGATTTCGATGCTGATACTTGCGATGTTGAAAAAGAGTGTGTATACATCCTCGGTCTTATCGCTCCCAAGCCGGAGTATCAACAACTCATTGTTGATGCTGGAGCCTTGCCTTGTCTTGTGGAATTGTTGATGAGACCTAAAGCCCTTGGTGTTTCTCAATCACTTTTTTCTCTTCTTCTTGGGAGAGTAGCTGATGCAATAACCAATCTTGCTCATGAAAATATCAATATCAAGACCCTTGTCAGGTTGGAAGGTGGCATTCCTCCTCTTGTTGATTTGCTTGAGTCCACTGATACAAAGGTACAGAGAGCTGCTGCAGGGGCCCTGAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGATTGTTGAATGTGATGCGTTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATGCATTATGAGGCAGTTGGTGTGATTGGAAATCTTGTCCACTCTTCACCAGAAATTAAGAGAGAGGTTCTTCTAGAAGGGGCTTTACAACCAGTTATTTGCCTACTAAGTTCCCCCTGTTTGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTTGCCACAACGGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAAAACCTTTAATCAAAATGCTCAAGTCTTCAGATTTACAACTCAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAACGGAGGTATAGAGCCTCTCCTCAATCTTCTTGCCACAAAGAACCCTTCTGTCCAACACAATGCAGCTTTTGCTCTCTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCGGATGGTTTACAAAAACTGCAGGATGGACATTTCAGTGTTCTTCCTACTCAAGAGTGTGTAGCAAAAATGTTAAAAAGATTGGAGGAGAAGATGCAAGGCCGAGTACTGAAGCAAATGTTATATCTTATGCGCTCTGGGGAAAAGGTTGTTCAAAAACGTGTAGCTCTTGCTCTTGCACATTTATGTTCCGCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGATCTCCTTGAATCTACAATAAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACACAATGGCTACCAAAGGAATTGGTGCCTCTATTGTTGATCTTGCGCCTACATCACCAACTTCCCAGGTTTACTTGGGTGAGCAATATGTAAACAATCCACTACTTTCTGATGTCACATTCATAGTTGAAGGCAAACTCTTTCATGCTCATAGAGTCTGTTTAGTTTCATCTGATATATTTCGCATAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACTGGAACAGTCGATGTTGATTTGGATGTTGCCCCGGACCTCCTTAAAGCTGCAGATCAATATCTTCTCGATGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTGAGGATATTTCTGTGGAAAATGTTTCACTAATGTATATGATGTCAGACACTTATAATGCTACATCGTTAAAATATTCATGCATACTATTTATCTTGGAGCAATTTGATAAATTGAGCTCCAAACCATGGTATTGTCACTTTATCCGATGCATTAAGCCGGACATTCGGAACTTCTTCTCGACTTTACTTACCATGCCTAAACATGCTGACTAG 2208 0.4035 MKIFLPQNLDKRKSLFTFKIEFQSLTHFKLNFNTILILRKTITFNLMDRKETLKRKFDFTDDDESTDEVLHENSRRLTLADDITNRIDLLNSVFSSSDPDIGSAQNALVFLSEYAKDDDMVDSMVVCGVVPALVKVLRMVSNGGDFDADTCDVEKECVYILGLIAPKPEYQQLIVDAGALPCLVELLMRPKALGVSQSLFSLLLGRVADAITNLAHENINIKTLVRLEGGIPPLVDLLESTDTKVQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAMHYEAVGVIGNLVHSSPEIKREVLLEGALQPVICLLSSPCLESQREAALLIGQFATTDSDCKIHIAQRGAIKPLIKMLKSSDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLATKNPSVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTQECVAKMLKRLEEKMQGRVLKQMLYLMRSGEKVVQKRVALALAHLCSADDRKTIFIDNNGLELLLDLLESTIKKQKREASAALHTMATKGIGASIVDLAPTSPTSQVYLGEQYVNNPLLSDVTFIVEGKLFHAHRVCLVSSDIFRIMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAPDLLKAADQYLLDGLKRICESVISEDISVENVSLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDIRNFFSTLLTMPKHAD* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1493 735 Pfam BTB/POZ domain 565 666 IPR000210 GO:0005515
Psa3g1493 735 Gene3D - 305 445 IPR011989 -
Psa3g1493 735 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 50 735 - -
Psa3g1493 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Psa3g1493 735 Gene3D - 448 552 IPR011989 -
Psa3g1493 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 397 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 217 258 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 167 216 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 500 540 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 260 300 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 117 166 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 302 342 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 344 384 IPR000225 GO:0005515
Psa3g1493 735 SMART arm_5 385 425 IPR000225 GO:0005515
Psa3g1493 735 SMART BTB_4 572 668 IPR000210 GO:0005515
Psa3g1493 735 SUPERFAMILY POZ domain 563 665 IPR011333 -
Psa3g1493 735 Gene3D - 201 304 IPR011989 -
Psa3g1493 735 Coils Coil 510 530 - -
Psa3g1493 735 Gene3D - 50 200 IPR011989 -
Psa3g1493 735 Gene3D Potassium Channel Kv1.1; Chain A 563 706 IPR011333 -
Psa3g1493 735 Pfam Armadillo/beta-catenin-like repeat 260 299 IPR000225 GO:0005515
Psa3g1493 735 Pfam Armadillo/beta-catenin-like repeat 228 257 IPR000225 GO:0005515
Psa3g1493 735 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 50 735 IPR044282 -
Psa3g1493 735 ProSiteProfiles BTB domain profile. 572 638 IPR000210 GO:0005515
Psa3g1493 735 SUPERFAMILY ARM repeat 81 539 IPR016024 -
Psa3g1493 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 229 264 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1493 Psa-Chr3 136770240 136775686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1493 246 539 U-box Gene Family AT3G46510 25.424 2.38e-13 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Psa3g1493 BTB 3.7e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1493 - - qsu:112036025 840.106