Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1458 ATGGGTAATGGTGACTATGATTCTTACTCTTCTGGTATGAACGTTGAGAGTGTTCACCGTGTGGCTATTCCGCCACCGCAACCGTTTTTCGAGTCTCTGAAATATTCTATGAAAGAGACTTTATTCCCGGATGATCCATTGAGAAAGTTCAAGAACCAACCAGCTTCTAAGAAGCTTGTGCTGGCTCTTCAACACTTTCTGCCCATTTTGGAGTGGGGTCCAAAATATACTCTTCCGTTCTTGAAGTCAGATCTTATTGCTGGGATCACCATTGCTAGTTTGGCTATTCCTCAAGGGATTAGTTATGCTAAGCTTGCGAATCTTCCTCCGATTCTTGGACTTTATTCAAGCTTTATACCTCCGTTGATCTATGCGATGATGGGTAGCTCGAGGGATTTGGCGGTGGGAACTGTGGCGGTTGGATCGCTTCTGATGGCGTCGATGTTGGGTCGTGAAGTTAGTCCGACCGAGAATCCGACGCTGTTTCTTCACCTTGCTTTCACTGCTACATTCTTTGCAGGACTTCTACAATTATCACTGGGCCTATTTAGGTTAGGTTTTATTGTGGATTTTCTATCACATGCAGCGATAGTAGGGTTCATGGGAGGAGCAGCTACAGTAGTTTGTCTCCAACAGCTAAAATCGATTTTAGGACTTGAAAAATTCACACATAAAGCTGATATTGTGTCAGTTATGAACTCTGTTTTTAGCCAAACTCACGAGTGGAGGTGGGAAAGTGCAGTGTTAGGATGTTGCTTTATTTTCTTCCTCCTTGTTACAAGATACTTCAGCAAACGACAACCCAAGTTCTTTTGGGTGTCAGCCATGGCGCCACTCACGTCGGTGATATTGGGAAGTATATTGGTTTATCTAACTCACGCTGAGAAACACGGCGTCCAAGTGATAGGAAACTTGAAGAAGGGGCTAAATCCACCTTCAGCAACAGATTTAGTGTTTGTGTCACCTTATATGGGCACAGCCATCAAAACTGGACTCATCACTGGTATAATAGCTCTTGCGGAAGGAATAGCAGTAGGAAGAAGCTTTGCAATCTATTGGCACCTGAATATTTTTGGCTCACTAACCTCTTGCTACCTCACAACAGGACCGTTTTCGCGTTCGGCTGTGAATTACATGCTGGTTGCAAAACTGCTGCATCAACATGTTGTTGAAATTGGGTTAGTACTAGCAGTTGCAATATCTGTACTCAGAGTACTTTTATTTATAGCAAGGCCTAGAACATTTGTTTTAGGAAACATTCCGAATTCATCGGCATACAGAAACGTAGAACATTATCCAAATGCACATCATGTTCCTGGAATACTAATTCTTGAAATTGACGCGCCGATTTACTTTGCAAATGCAAGCTATTTAAGAGAGAGGATTACAAGGTGGATTAATGAAGAGGAAGAGAAAATCAAAGGTGCAGGAAGTACTAGTTTGCAGTATGTTATAGTGGATATGACAGCTGTTGCGAACATTGATACAAGTGGAATAAGCATGCTTGAAGAGTTCAAGAAGTCGGTTGACAGAACAGGACTACAACTCGTTTTGGTCAATCCGGGAAGCGAGGTGACGAAGAAGCTGAACAAATCAAAGTTCCTAGATGAAATAGGACACAAATGGGTTTATGTGACAGTTGAAGAGGCTGTTGGAGTATGCAGCAGCTTCATGCTTCATACACAAAAGGCTAACCCCATGAAAGATGAATCAGAAGGTTTGAATAATGTGTGA 1734 0.4245 MGNGDYDSYSSGMNVESVHRVAIPPPQPFFESLKYSMKETLFPDDPLRKFKNQPASKKLVLALQHFLPILEWGPKYTLPFLKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMASMLGREVSPTENPTLFLHLAFTATFFAGLLQLSLGLFRLGFIVDFLSHAAIVGFMGGAATVVCLQQLKSILGLEKFTHKADIVSVMNSVFSQTHEWRWESAVLGCCFIFFLLVTRYFSKRQPKFFWVSAMAPLTSVILGSILVYLTHAEKHGVQVIGNLKKGLNPPSATDLVFVSPYMGTAIKTGLITGIIALAEGIAVGRSFAIYWHLNIFGSLTSCYLTTGPFSRSAVNYMLVAKLLHQHVVEIGLVLAVAISVLRVLLFIARPRTFVLGNIPNSSAYRNVEHYPNAHHVPGILILEIDAPIYFANASYLRERITRWINEEEEKIKGAGSTSLQYVIVDMTAVANIDTSGISMLEEFKKSVDRTGLQLVLVNPGSEVTKKLNKSKFLDEIGHKWVYVTVEEAVGVCSSFMLHTQKANPMKDESEGLNNV* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1458 577 ProSitePatterns SLC26A transporters signature. 110 131 IPR018045 GO:0008271|GO:0008272
Psa3g1458 577 CDD STAS_SulP_like_sulfate_transporter 432 547 - -
Psa3g1458 577 PANTHER SLC26A/SULP TRANSPORTER-RELATED 389 575 - -
Psa3g1458 577 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 380 - -
Psa3g1458 577 SUPERFAMILY SpoIIaa-like 432 554 IPR036513 -
Psa3g1458 577 Pfam Sulfate permease family 81 407 IPR011547 GO:0016021
Psa3g1458 577 Gene3D STAS domain 411 556 IPR036513 -
Psa3g1458 577 ProSiteProfiles STAS domain profile. 431 554 IPR002645 -
Psa3g1458 577 PANTHER SULFATE TRANSPORTER 389 575 IPR001902 GO:0015301|GO:0016020|GO:0055085
Psa3g1458 577 PANTHER SULFATE TRANSPORTER 2 380 IPR001902 GO:0015301|GO:0016020|GO:0055085
Psa3g1458 577 Pfam STAS domain 432 550 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1458 Psa-Chr3 133628607 133634203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1458 10 565 Inorganic Solute Cotransporters AT3G15990 45.625 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1458 K17471 - gmx:100791091 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1458 3 133628607 133634203 Psa3g1458 3 133628607 133634203 ECH
Psa3g1458 3 133628607 133634203 Psa6g1381 6 65887521 65892339 PCT