Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1451 ATGGAGCAGTATGAAGTTCTAGAGCAGATCGGCAAAGGTGCATTTGGTTCTGCTCTACTTGTGCGGCACAAACATGAAAAGAAAAAGTATGTTCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGCAGATCGGCTCACCAGGAGATGGAGCTTATATCGAAAGTTCGCAATCCGTTTATTGTGGAATATAAAGATTCTTGGGTGGAAAAGGGTTGTTTTGTATGTATCATCATCGGCTATTGTGAAGGAGGAGATATGGCCGAAGCTATTAAAAAGGCCAACAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTTGTCCAGTTACTGATGGCACTAGATTACTTGCATGTAAATCATATTCTTCATCGCGATGTTAAGTGTTCAAATATATTCTTAACAAAAGACCAAGATATACGTCTAGGTGATTTTGGTCTCGCTAAAATGTTGACTTCTGACGATCTTGCTTCCTCAATTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTCGCGGATATACCCTATGGCTCAAAGTCAGATATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCAGCTCACAGGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTCACAAAATAAACAAGTCTGTAGTAGCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCTGGAGAGTTACTAAATCATCCTCATCTTCAGCCTTACATTCTTAAAGTTCACCAAAAACTAAATAGCCCCAGAAGAAGCACTTTTCCGTTCCAATGGCCCGAGTCAAACTATGCAAGAAGAACTCGCTTTCTGGAACCAGAATCTGTTTCTACACTTTCTGACCAAGACAGATACTTTTCCTTAAACAATCACAGGGCCTTGAATCCTAGTATTTCTGGTACCGAGCAAAGTTCTCAATATTCAACTCAACGGGCTCAAGAATTATCCAATTGTTCAGAAGAGAAGCCCTATGACTTATCTGCTCGTGGTGTCCGTGATTACTGCAATACTAACAAATCAAAAGTAATAAAGTCTTCAACTGGTGAGAGAACACCGAGACTTAGAGTAGCTAAGGATTCTGCTGGTGCCAGAAGACACACGATGGCACCACCAAAGATATCGGCTACTGGTTCAAAGCGTGAATCACTTCCGGTACCTCGCGCACCATCTGGTAAATCTACCATGCCAACTCGAAGAACATCGCTTCCGCTGCCTACAAGAGGCAGGAACACGACAAACTTATACACCAATTCTAGTTATGTAAATTCTCCCGATGTTTCTGTCGATGCACCACAAATCGACAAGATCGCAGAATTCCCAATGGCTTCCTCCGAGAACCCATTTTTCCATGTTATTCGCAGACCATCATCACCATCAGCCAAACGCTTTTCTACCTCAGCCGGGAGTGCTGATTGCACAATCACAAAAGACAAGTGTACAATCCTTGTGGACAAAGTTACTGTCCCCGCTAGCATCACTAATGAGTGCTCTAACAATGTTACAACCGGCGTTTCAAGCCACTCCTCACCTGAGTCGCGTCAACATCGGTTTGACACCTCGTCATATCAGCAACGCGCTGAGGCATTAGAGGGGCTACTGGAGTTCAGTGCTAGGCTACTGCAACAACATAGGTTTGATGAACTTGGTGTATTGCTGAAGCCATTTGGGATCGAGAAGGTTTCGCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGTTTTAAACAAAACTCTGATCTAAGATTTTCAAATACACTTGCATGA 1827 0.434 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALIHKINKSVVAPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYILKVHQKLNSPRRSTFPFQWPESNYARRTRFLEPESVSTLSDQDRYFSLNNHRALNPSISGTEQSSQYSTQRAQELSNCSEEKPYDLSARGVRDYCNTNKSKVIKSSTGERTPRLRVAKDSAGARRHTMAPPKISATGSKRESLPVPRAPSGKSTMPTRRTSLPLPTRGRNTTNLYTNSSYVNSPDVSVDAPQIDKIAEFPMASSENPFFHVIRRPSSPSAKRFSTSAGSADCTITKDKCTILVDKVTVPASITNECSNNVTTGVSSHSSPESRQHRFDTSSYQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGIEKVSPRETAIWLAKSFKQNSDLRFSNTLA* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1451 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa3g1451 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Psa3g1451 608 MobiDBLite consensus disorder prediction 318 339 - -
Psa3g1451 608 CDD STKc_Nek 3 258 - -
Psa3g1451 608 SUPERFAMILY Protein kinase-like (PK-like) 1 331 IPR011009 -
Psa3g1451 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1451 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa3g1451 608 PANTHER SERINE/THREONINE-KINASE NEK4 1 589 - -
Psa3g1451 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1451 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 589 - -
Psa3g1451 608 MobiDBLite consensus disorder prediction 368 384 - -
Psa3g1451 608 MobiDBLite consensus disorder prediction 318 343 - -
Psa3g1451 608 Gene3D Transferase(Phosphotransferase) domain 1 86 344 - -
Psa3g1451 608 MobiDBLite consensus disorder prediction 366 421 - -
Psa3g1451 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1451 Psa-Chr3 132814717 132820157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1451 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 5.04e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa3g1451 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1451 K08857 - gmx:100805201 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1451 3 132814717 132820157 Psa3g1451 3 132814717 132820157 ECH
Psa3g1451 3 132814717 132820157 Psa6g1376 6 65332193 65336260 PCT