Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1445 ATGGAAAGCTATATTGAAACAGATTTGATTGTTAATCACAAGGATACAGAATTAAGGTTGGGATTACCGGGTAATGATGATGAACATTCATGCAATATTGGATCTATTGTTAGAAGCAACAAGAGATCTTTTTCACCAGAAACAAGTGTCGAAGAGTCTTCCATTTGCAATGCTTCTAGTTCCTCAACCACAAGTGATCATGACCAAAGCAGTGTTCAACCTTCAAAGGTGCAAGTAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGTGGAAGAAGGATGTGGAAAGTACGTGAAAGTCAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAATGTTTACAAAAGCTATTCAGAACTTCTCATAGCTTTGGAAAATTTGTTCAAGTGCACATTGGGTGAATATTCAGAAAGAGAAGGGTACAATGGATCTGAGCATGCACCTACTTATGAGGATAAGGATGGTGATTGGATGTTGGTTGGAGATGTTCCATGGAACATGTTCATATCCTCTTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGTCAAAGGGGTTGGCATGTTTATGA 600 0.39 MESYIETDLIVNHKDTELRLGLPGNDDEHSCNIGSIVRSNKRSFSPETSVEESSICNASSSSTTSDHDQSSVQPSKVQVVGWPPIRSFRKNSLQQKKVEEGCGKYVKVSMAGAPYLRKIDLNVYKSYSELLIALENLFKCTLGEYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSESKGLACL* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1445 199 SUPERFAMILY CAD & PB1 domains 97 187 - -
Psa3g1445 199 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 197 IPR003311 GO:0005634|GO:0006355
Psa3g1445 199 Gene3D - 98 199 - -
Psa3g1445 199 MobiDBLite consensus disorder prediction 55 76 - -
Psa3g1445 199 Pfam AUX/IAA family 39 197 IPR033389 -
Psa3g1445 199 ProSiteProfiles PB1 domain profile. 103 195 IPR000270 GO:0005515
Psa3g1445 199 PANTHER AUXIN-INDUCED PROTEIN 6 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1445 Psa-Chr3 132117753 132119254 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1445 91 196 B3 DNA Binding Superfamily AT2G46530 35.849 2.47e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa3g1445 AUX_IAA 9.1e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1445 K14484 - gmx:100792134 275.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1445 3 132117753 132119254 Psa6g3343 6 286650033 286653795 ECH
Psa3g1445 3 132117753 132119254 Psa3g1445 3 132117753 132119254 ECH
Psa3g1445 3 132117753 132119254 Psa6g1341 6 62384930 62387350 ECH
Psa6g3190 6 275769223 275772691 Psa3g1445 3 132117753 132119254 ECH