Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1438 ATGGAGGTTGTTGGCATGAAGAAGGAGAATATGAGATTTGAAGAAACCGAGCTGAGACTTGGAATTGGATCAGCCATAGTTTCTGAAGAAGTTGTAAGGAAGAGAGGATTTTCTGAGACTGAAACTCATCATGATGATGAGAAAACTACCATGGATTTGATGCTTAATCTTTCCTCTAAGGAAGCTACTGCTGAGGTAGATCCAAATCATAAGAGCACCAAGACTTTGCCAAAGGAGAAGACTCTCTTGCTTGCAGATCCAGCTAAACCTCCTACAAAGACGCAAGTGGTAGGTTGGCCACCTGTGAGGTCGTTCAGGAAGAACATGTTAGCAACACAAAAGAGTGAAGAAAGTGGCAATCTAAATCACATTGCTATTAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGTAAAGTAGACTTGAAGATGTACAAAAACTACTCTCAGCTTTCCGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGAAACTGTGAATCTCAAGGCATGAAGGATTTTATGAATGAGAGTAAGTTGATGGATCTTTTAAACAACTCTGATTATGTCCCAACCTACGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGACGTTCCATGGGAGATGTTTGTTGAATCATGCAAACGTCTCCGTATCATGAAAGGAAAGGAGGCTATTGGTATCGCACCAAGAGCTATGGAGAAATGCAAAAACAGGAGCTAG 735 0.4204 MEVVGMKKENMRFEETELRLGIGSAIVSEEVVRKRGFSETETHHDDEKTTMDLMLNLSSKEATAEVDPNHKSTKTLPKEKTLLLADPAKPPTKTQVVGWPPVRSFRKNMLATQKSEESGNLNHIAISFVKVSMDGAPYLRKVDLKMYKNYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGIAPRAMEKCKNRS* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1438 244 ProSiteProfiles PB1 domain profile. 126 226 IPR000270 GO:0005515
Psa3g1438 244 Pfam AUX/IAA family 15 235 IPR033389 -
Psa3g1438 244 Gene3D - 122 237 - -
Psa3g1438 244 SUPERFAMILY CAD & PB1 domains 128 225 - -
Psa3g1438 244 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 237 - -
Psa3g1438 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 237 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1438 Psa-Chr3 131296009 131305758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1438 127 234 B3 DNA Binding Superfamily AT4G23980 32.407 3.46e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Psa3g1438 AUX_IAA 5.5e-81 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1438 K14484 - gmx:100810013 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1438 3 131296009 131305758 Psa3g1438 3 131296009 131305758 ECH