Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1435 ATGAACTATCTGTATCCAGTGAAAGAGGAGTATTTGGAATTCGAAGCAACCTCGTCAACATCAATGGTTGGTGTTCCACGACCAATGGAGGGTCTTCATGAAGTTGGACCGCCACCATTTCTAACAAAAACTTTCGATGTTGTTGAGGATCCCACAACGAGTCACATAGTTTCATGGAACAGAGACGGTGTTAGCTTTGTTGTTTGGGATCCAAATGCTTTTTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTCGACAATTAAACACTTATGGATTTAGAAAAATCGATCCTGAAAAATGGGAGTTTGCGAACGAAGGATTTCTGAGAGGGCATAAGCATCTTTTAGCGAACATTAAGAGAAGGAGACAAACTTCACAACCTAGTATTTCATCTTCATCTTCTTCTTCTCAACAACCATCATTTGGTCTTGAAGTTGGTCGTTTTGGATTAGACGAAGAAATCGATCATTTGAAACGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTGAGACAGCAACAGCAGAATACGAGATCTTGTCTTCAAGCTATGGAGGAGAGGCTTAGAGGGACAGAGATTAAGCAGCAACAGATGATGGCTTTTTTGGCTAGAGCTATGAGAAATCCTGCTTTTATTCAGCAGTTGCTTCAGCATAAGGAAAGGAGAAAGGTGATTGAAGAAGATGTTACTAAGAAGAGGAGAAGGCCTATTGAGTATGGAGAATCAAGCAATAGTGTTGAATTCGGGTTTGAAGTGTCGGAGTTGGAGGTTCTGGCTATGGAAATGCAAGGTCTTGGTAGAGGTGGTGGAGAACAAGAGGAAGAGGAAGATAATGAGGTAGGTTTTGCAGCAGTTGATTGGACAAGAATCTCTGATAGTTGA 909 0.4092 MNYLYPVKEEYLEFEATSSTSMVGVPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWNRDGVSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPEKWEFANEGFLRGHKHLLANIKRRRQTSQPSISSSSSSSQQPSFGLEVGRFGLDEEIDHLKRDKQVLMMELVKLRQQQQNTRSCLQAMEERLRGTEIKQQQMMAFLARAMRNPAFIQQLLQHKERRKVIEEDVTKKRRRPIEYGESSNSVEFGFEVSELEVLAMEMQGLGRGGGEQEEEEDNEVGFAAVDWTRISDS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1435 302 Gene3D - 33 130 IPR036388 -
Psa3g1435 302 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 253 IPR027725 -
Psa3g1435 302 MobiDBLite consensus disorder prediction 129 148 - -
Psa3g1435 302 Coils Coil 162 182 - -
Psa3g1435 302 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa3g1435 302 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa3g1435 302 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa3g1435 302 SUPERFAMILY "Winged helix" DNA-binding domain 36 129 IPR036390 -
Psa3g1435 302 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 18 253 - -
Psa3g1435 302 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa3g1435 302 Pfam HSF-type DNA-binding 40 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa3g1435 302 SMART hsfneu3 36 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1435 Psa-Chr3 130980915 130983844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1435 16 291 HSF AT3G22830 53.125 1.42e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa3g1435 HSF_DNA-bind 4.2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1435 K09419 - gmx:100811798 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1435 3 130980915 130983844 Psa6g1370 6 64582464 64586848 PCT