Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1426 ATGGAACCACACGGTGCCGGACCACTTCGTTCACGGAGTTCACAGTCCGCTTCTCCTTCCCACTCCGCCTCCGCCTCCGCCACCTCATCCATCCGTAAACGCAAACTCGTATCTGAAGATCACGCGCCTCCATTTCCACCTTCTTCTTTATCCGCCGACACACGCGACGGCGCACTTACCTCCAATGACGACCTAGAAAGCATTTCCGCCCGTGGTGCGGACTCTGATTCCGACGAGGACTCGGAGGATGCAGTTGTTGATGATGACGAAGACGAGTACGACAATGATAACGGTTCCTCCATGCGCAATTTCACCGCTTCCAGGCTCAACAATGCTCCTGCCGCTCCCCGCAATAGTAAGCTCAAAACTGAAAACTCCACTGTTAAGATCGAACAGTCAGATGGAACTAAAGACTCCGGACCTTCTGTTACCGGTGCTGCTCCCGGTGCCGGTTCTGTTCCCGGCATTGTGGTTAAGGAGGATGCAACGAAGATATTCACTGAAAATTTGCAGACCAGTGGTGCTTACAGTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAAGAAACTGGAAAACTCAAATTTGCATGCCTTTCGAATGATGGTGTTGACGAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAGGAGTACATCGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGTCCGTATGCAAGCCAGAGGTTTGGTGAGATAGCCTTTTGTGCGATTACAGCCGATGAACAAGTAAAAGGATATGGGACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATGTAGATGGGTTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCATCTGGAGAAAGATCGATGGCAAGGTTACATAAAGGATTATGATGGGGGAATTCTCATGGAATGTAAGATTGATCCAAAGCTTCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGACAGGCAATAGATGAAAAGATTAGAGAACTGTCAAACTGTCACATTGTTTATACTGGAATTGATTTTCAGAAGAAAGAAGTTGGTATTCCCAAAAAAATTGTTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCGCGGTTCAGAACTTTAGGGGGTTCTACTGACAATGCTGCAAACCTAAAACATTTAACTGCGTTTATGCGTTCACTTCTCAAACAGTCGTTGCTTGATCATGCCGATGCTTGGCCATTCAAGGAACCTGTTGATCCACGGGATGTTCCTGATTACTATGAGATCATCAAAGATCCAATGGATCTGAAGACAATGAGTAAAAGGGTGGAATCAGAACAATATTACGTGACATTTGAGATGTTTGTTGAGGATGTGAGAAGAATGTTTGGGAATGCACGCACCTATAATTCTCCAGAAACCATATATTACAAATGTGCTACAAGGCTAGAAGCGCACTTTCAAAGCAAAGTGACATCCGTCCTCCAGTCTGGCACCAAAATTCAATAG 1629 0.4475 MEPHGAGPLRSRSSQSASPSHSASASATSSIRKRKLVSEDHAPPFPPSSLSADTRDGALTSNDDLESISARGADSDSDEDSEDAVVDDDEDEYDNDNGSSMRNFTASRLNNAPAAPRNSKLKTENSTVKIEQSDGTKDSGPSVTGAAPGAGSVPGIVVKEDATKIFTENLQTSGAYSAREESLKKEEETGKLKFACLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYTGIDFQKKEVGIPKKIVDDIPGLREAGWTPDQWGHSRFRTLGGSTDNAANLKHLTAFMRSLLKQSLLDHADAWPFKEPVDPRDVPDYYEIIKDPMDLKTMSKRVESEQYYVTFEMFVEDVRRMFGNARTYNSPETIYYKCATRLEAHFQSKVTSVLQSGTKIQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1426 542 SMART bromo_6 426 536 IPR001487 GO:0005515
Psa3g1426 542 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 204 351 IPR016181 -
Psa3g1426 542 MobiDBLite consensus disorder prediction 98 140 - -
Psa3g1426 542 Gene3D - 418 541 IPR036427 GO:0005515
Psa3g1426 542 ProSiteProfiles Bromodomain profile. 446 517 IPR001487 GO:0005515
Psa3g1426 542 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 199 346 IPR000182 GO:0016407
Psa3g1426 542 PANTHER BNAC04G26160D PROTEIN 9 542 - -
Psa3g1426 542 CDD Bromo_gcn5_like 433 531 - -
Psa3g1426 542 ProSitePatterns Bromodomain signature. 451 509 IPR018359 -
Psa3g1426 542 MobiDBLite consensus disorder prediction 53 68 - -
Psa3g1426 542 PRINTS Bromodomain signature 449 462 IPR001487 GO:0005515
Psa3g1426 542 PRINTS Bromodomain signature 463 479 IPR001487 GO:0005515
Psa3g1426 542 PRINTS Bromodomain signature 479 497 IPR001487 GO:0005515
Psa3g1426 542 PRINTS Bromodomain signature 498 517 IPR001487 GO:0005515
Psa3g1426 542 MobiDBLite consensus disorder prediction 1 151 - -
Psa3g1426 542 MobiDBLite consensus disorder prediction 76 95 - -
Psa3g1426 542 MobiDBLite consensus disorder prediction 9 32 - -
Psa3g1426 542 CDD NAT_SF 239 293 - -
Psa3g1426 542 Pfam Acetyltransferase (GNAT) family 239 317 IPR000182 GO:0016407
Psa3g1426 542 Gene3D - 188 352 - -
Psa3g1426 542 Pfam Bromodomain 444 521 IPR001487 GO:0005515
Psa3g1426 542 PANTHER GH11602P 9 542 IPR037800 GO:0004402
Psa3g1426 542 SUPERFAMILY Bromodomain 427 534 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1426 Psa-Chr3 129898331 129911727 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Psa3g1426 Bromodomain 8.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1426 K06062 - gmx:100813942 919.072