Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1419 ATGGCCAATAACCCTTCCGACGCACCCGCCGCCGATGACTTCCTCGAACAAATCCTCAGCCTTCAGACCTTCGCTTCTGCCGACTCTGGATTGACCGGACCTGACATCTCTCTGACGGGAACCTCGCCGATGATGCTACAGCTCAACTCCTCCGACGCCAACCATCACCTCGCCTCCGGAGGTTCCTTTCATACGCCGGTGTACCAGTTAGGGTTGAGCTTAGACCAAGGCAAAGGAGGGTTTTTGAAGCCGGAGGAAGCCTCTGGTAGCGGGGAACGCTTCCGCAACGACGTCGTTCATGGTAGACCTAATAATGTGTTTCATGGGCAACCCATGCATACAACTGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACGGATCCTCACAGCATAGCTGAGCGATTACGCAGGGAGAGAATAGCAGAAAGAATTAGGGCGTTACAAGATCTGGTTCCAAGTGTCAATAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTGTTGAGCATGAGTCGATTGGGTGGAGCAGGTGCAGTGGCCCCACTGGTAACCGATATCCCATTATCATCAGTCGAGGAAGACGGCAGTGAGGGTGGAAGAAATCGGCCGGCTTGGGACAAGTGGTCGAATGATGGCACAGAAAAACAGGTCGCCAAGCTTATGGAAGAAAACGTTGGAGCTGCCATGCAATTGCTTCAATCAAAGGCGCTTTGTATCATGCCCATCTCACTGGCATCTGCGATATACCAGTCACAGCCACCGGACAGCTCTAGTATAGTCAAGCCTGAAACTAATCCACCTTCACAGACCTAG 882 0.5204 MANNPSDAPAADDFLEQILSLQTFASADSGLTGPDISLTGTSPMMLQLNSSDANHHLASGGSFHTPVYQLGLSLDQGKGGFLKPEEASGSGERFRNDVVHGRPNNVFHGQPMHTTVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEDGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPSQT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1419 293 Pfam Helix-loop-helix DNA-binding domain 140 184 IPR011598 GO:0046983
Psa3g1419 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 194 IPR036638 GO:0046983
Psa3g1419 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
Psa3g1419 293 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 280 - -
Psa3g1419 293 SMART finulus 141 190 IPR011598 GO:0046983
Psa3g1419 293 Gene3D - 130 192 IPR036638 GO:0046983
Psa3g1419 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1419 Psa-Chr3 127576951 127580994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1419 63 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 5.72e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1419 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1419 - - gmx:100797789 452.981