Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1417 ATGATTCAAATGACAAAACCAGCGCTTGATTACTACTTTGATTCTTACTCTCACTTTGGAATTCATGAAGAAATGTTGAAGGACACTGTTAGAACCAAGACATATCAAAATGTTATTTATCAAAATAGGTTTTTATTCAAGAATAAAGTAGTTCTTGATGTTGGTGCCGGAACTGGGATTTTGTCACTATTCTGTGCCAAAGCAGGTGCAGAACATGTCTATGCCGTTGAATGCTCTGATATGGCTGACATGGCAAAGCAGATAGTTGAAACTAATGGTTACTCTAAAGTTATAACTGTTTTGAAAGGGAAGATTGAAGAACTTGAACTCCCTGTTCCTAAAGTTGATATAATCATTTCTGAATGGATGGGATATTTTTTTTTGTTGTTTGAGAATATGTTAAATTCTGTGCTCTATGCACGTGATACATGGCTTGTGGATGATGGCGTTGTGCTACCTGATATAGCAACCCTCCATCTAACTGCAATTGAAGATAAAGACTACAAAGAAGATAAAATTGAGTTTTGGAACAATGTATATGGATTTAACATGAGCTGCATCAAGAAGCAAGCCTCGTCAGAGCCTCTTGTTGACACAGTTGACCAGAATCAGATTGCAACAAACTTGTGCTATCAACCTGATGGACAGGGAGGAATTATCGGGTCCATGACAGGAAATTGCCGGTTTTATAGTGTATCAGATAACAACTTTCGGATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGAAGCTCCTAGCACTGGCAATGGCCATGGCAGAACTCATGTTTCAAATGCCAAGAGCATCAAAGGTCATAAAAAAACTCAACACCGCTGCGGAACACCCTCGAGCTTTACATCCATCGCTCTCCTCCGCTGCTAAAGAACTTGTCGAAAATAGCTTAGACGCCGGCGCCACCGACATCAAAATCTCTCTCAAAGACTTCGGTGAAGAATGGTTTCAGAGGAGAGGCATCGAGTTCTCTTTGTGCTCTTGGAAACTTGACATTGAAATGAAAACCGCGCGGCAAGGTGGAACGGCTGTCACAGTTAAAAAGTTGTTCTATAATCTTGTGGTGCGAAGCAAAGAGTTTAAGCGGAACATTCGCAAGGAATATGGCAAGTTGGTTTCTCTCTTGAATGCATATGCCCTTATTGCAAAAGGTGTTCGATTTGGTTGTACCAACACTACTGGCAAAAATGCAAAGCCTGTGGTACTCAAGACACAAGGAAATGATTCTCTAAAAGATAACATCATATCAGTGCTTGCCATGAACACTTTCAACTGCTTGGAACCCATGTCATTATGTATATCGGAGAGTTGCGAAATTGATGGTTTTCTCTCCAAGCCTGGACTCGGCAAATCAAAAGAACCAAGGGAGATGTTACTGTCTTGA 1413 0.4041 MIQMTKPALDYYFDSYSHFGIHEEMLKDTVRTKTYQNVIYQNRFLFKNKVVLDVGAGTGILSLFCAKAGAEHVYAVECSDMADMAKQIVETNGYSKVITVLKGKIEELELPVPKVDIIISEWMGYFFLLFENMLNSVLYARDTWLVDDGVVLPDIATLHLTAIEDKDYKEDKIEFWNNVYGFNMSCIKKQASSEPLVDTVDQNQIATNLCYQPDGQGGIIGSMTGNCRFYSVSDNNFRMHQLIMDWSSKELYNSKKLLALAMAMAELMFQMPRASKVIKKLNTAAEHPRALHPSLSSAAKELVENSLDAGATDIKISLKDFGEEWFQRRGIEFSLCSWKLDIEMKTARQGGTAVTVKKLFYNLVVRSKEFKRNIRKEYGKLVSLLNAYALIAKGVRFGCTNTTGKNAKPVVLKTQGNDSLKDNIISVLAMNTFNCLEPMSLCISESCEIDGFLSKPGLGKSKEPREMLLS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1417 470 CDD AdoMet_MTases 51 152 - -
Psa3g1417 470 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1.2-RELATED 6 209 - -
Psa3g1417 470 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 15 210 IPR029063 -
Psa3g1417 470 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 6 209 IPR025799 GO:0016274|GO:0018216
Psa3g1417 470 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 292 425 IPR036890 -
Psa3g1417 470 Gene3D - 331 428 IPR036890 -
Psa3g1417 470 Gene3D - 275 329 IPR036890 -
Psa3g1417 470 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 9 205 IPR025799 GO:0016274|GO:0018216
Psa3g1417 470 Gene3D - 156 211 - -
Psa3g1417 470 Gene3D Vaccinia Virus protein VP39 4 153 IPR029063 -
Psa3g1417 470 Pfam Ribosomal protein L11 methyltransferase (PrmA) 46 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1417 Psa-Chr3 127496737 127499111 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1417 12 207 C2H2 Transcription Factor Family AT3G12270 44.550 8.53e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1417 K11434 - gmx:100795951 370.933