Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa3g1412 | ATGGCGTCTGAAGAGCCCACCACCGTCGCCGTCGAGCAACCCATTGTGGAGGAGCCGGAAGCCGTCGACACGCTCCCACCAGTTGTCAATGAATCCGAAGAGCCCACTGCCAAGCCCAAGAAGGCACCCAAGGAGCCCAAGGCCAAGAAAGCTCCGGCCAAGCCCCGAACTCACCCCACCTATGAAGAGATGGTGAAGGAAGCGATTGTTGCTTTGAAGGAGAGGAACGGTTCAAGCCAGTACGCGATTGCGAAGTTCATTGAAGAGAAGCACAAGCAGCTTCCATCGAACTTCAAGAAGCTTTTGCTGGTTCAGATCAAGAAGCTTGTTGCTTCTGGCAAGCTCGTCAAGGTTAAGGCCTCTTACAAGTTACCGGCGAAGTCCTCTGCTGCAAAGCCCGCCAAGAAGCCTGCTGCTGCTAAGTCCAAAGCCAAGCCCAAGGCTAAAGCTGCTACCAAGTCAAAGGCTAAGCCCGCAGCTAAGGCTAAGCCAGCTGCCAAAGCCAAGCCCGCTGCTAAGGCCAAGCCAGCTGCCAAGGCTAAGCCCGCTGCTAAGGCAAAGCCTGCTGCCAAAGCTAAACCCGCTGCCAAGCCGGTTAAGACTGCCGCAGCCAAGCCAGCAGCCAAGGCCAAGCCTGCCGCGAAGCCTAAAGCTGCTGCTAAGGCGAAACCTGCTGCCAAAGCCAAGCCAGCTGCCAAAGCCAAGCCAGCTGCTAAGCCTGCCAAGGCTGCAAGGACCTCGACGAGGACTTCACCAGCGGCTGCAGCTGCTGCACCCAAGCCGGCGGCGAAGAAGGCTGCACCTGTGAAGAAGACTCCGGTGAAAGCAGCGGCGAAGGCCAAGACTGCGAAGTCTCCAGCCAAGAAGGCAGCAGCTAAGAGAGGGAAGAAGTGA | 894 | 0.5761 | MASEEPTTVAVEQPIVEEPEAVDTLPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIKKLVASGKLVKVKASYKLPAKSSAAKPAKKPAAAKSKAKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRTSPAAAAAAPKPAAKKAAPVKKTPVKAAAKAKTAKSPAKKAAAKRGKK* | 298 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa3g1412 | 297 | CDD | H15 | 57 | 124 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Psa3g1412 | 297 | MobiDBLite | consensus disorder prediction | 122 | 297 | - | - | |
| Psa3g1412 | 297 | MobiDBLite | consensus disorder prediction | 34 | 61 | - | - | |
| Psa3g1412 | 297 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 57 | 126 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Psa3g1412 | 297 | PANTHER | HISTONE H1 | 173 | 297 | - | - | |
| Psa3g1412 | 297 | PANTHER | HISTONE H1 | 4 | 202 | - | - | |
| Psa3g1412 | 297 | Gene3D | - | 53 | 137 | IPR036388 | - | |
| Psa3g1412 | 297 | PANTHER | HISTONE H1.1 | 173 | 297 | - | - | |
| Psa3g1412 | 297 | PANTHER | HISTONE H1.1 | 4 | 202 | - | - | |
| Psa3g1412 | 297 | SUPERFAMILY | "Winged helix" DNA-binding domain | 54 | 137 | IPR036390 | - | |
| Psa3g1412 | 297 | PRINTS | Histone H5 signature | 44 | 65 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Psa3g1412 | 297 | PRINTS | Histone H5 signature | 71 | 88 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Psa3g1412 | 297 | PRINTS | Histone H5 signature | 153 | 167 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Psa3g1412 | 297 | PRINTS | Histone H5 signature | 188 | 205 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Psa3g1412 | 297 | PRINTS | Histone H5 signature | 210 | 229 | IPR005819 | GO:0000786|GO:0003677|GO:0006334|GO:0030527 | |
| Psa3g1412 | 297 | SMART | h15plus2 | 55 | 121 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Psa3g1412 | 297 | MobiDBLite | consensus disorder prediction | 138 | 162 | - | - | |
| Psa3g1412 | 297 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
| Psa3g1412 | 297 | Pfam | linker histone H1 and H5 family | 58 | 121 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa3g1412 | Psa-Chr3 | 126501692 | 126502780 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa3g1412 | 59 | 125 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 38.806 | 4.68e-10 | 57.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa3g1412 | K11275 | - | gmx:100795994 | 122.864 |
Event-related genes