Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1409 ATGGAAGGAAAGAAAGTGTTTCAGTCCCAAAACAAATCAAGATTGGCCATCTTATCTCTGTCGAATATGATGAGTGTGCCAAGTTCGGTTGTTGCCGTCATTCAACTGAAAGTACCGGATGCTATATTTCAAGGAGGAAGCAACGTTGCTCTATCCGCCGCAGAGATTCTGGCGGTAGTTCTTCCGAAAGGGGAAGGCGAGCCGGATAATCTGGAACGTATTCTTAGGCTGTTAACCTCGTATGATATATTCGAGGAACATTTATGCAGCAACGGTGTTAGGAAATTCTCCCTCACAGAAATCGGCAAATGTCTGGCCACAGATGAAGAAGGGCTTTCTTACGCCCCATACGTGCTCCAGCACAATCAGGAAGCATATATGAGAGCTTGGCCTCGTCTAAAGGACGTGGTGGAGGACTCGTCCGTAGAACCATTCCGGAAGGTGAATGGGCAACACGCCTTGAACTTCTACGTGAATCCTGATCAGATAGCTTTGTTTAATAAGGCTTTTGTTGGGATGACTACTCCTTTCATGAGAGAAGTGTTGGAGTTCTACGATGGTTTTCAAGGGGTGGAAACTTTGGTAGATGTTGGTGGCAGTACTGGAGTTTCTTTATCTTTGATTATGGATAAGTTTCCTAATATAACTAAGGGAATCAATTTTGATCTTCCAAAAATGGTGGCTAGTGCACCCCAACTTCCAGGTATATATACTATACATACAGAGACGGATTCAAGGACGAATAGCTATATCTCAACCCTTCCGCCACATAAATTAGATCAAAGACTCTAA 792 0.4369 MEGKKVFQSQNKSRLAILSLSNMMSVPSSVVAVIQLKVPDAIFQGGSNVALSAAEILAVVLPKGEGEPDNLERILRLLTSYDIFEEHLCSNGVRKFSLTEIGKCLATDEEGLSYAPYVLQHNQEAYMRAWPRLKDVVEDSSVEPFRKVNGQHALNFYVNPDQIALFNKAFVGMTTPFMREVLEFYDGFQGVETLVDVGGSTGVSLSLIMDKFPNITKGINFDLPKMVASAPQLPGIYTIHTETDSRTNSYISTLPPHKLDQRL* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1409 263 SUPERFAMILY "Winged helix" DNA-binding domain 11 108 IPR036390 -
Psa3g1409 263 Gene3D - 3 110 IPR036388 -
Psa3g1409 263 Pfam O-methyltransferase domain 130 233 IPR001077 GO:0008171
Psa3g1409 263 PANTHER O-METHYLTRANSFERASE 7 239 IPR016461 GO:0008168
Psa3g1409 263 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 237 IPR029063 -
Psa3g1409 263 Gene3D Vaccinia Virus protein VP39 111 246 IPR029063 -
Psa3g1409 263 PANTHER OS02G0823400 PROTEIN 7 239 - -
Psa3g1409 263 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 263 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1409 Psa-Chr3 126413366 126414815 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1409 8 236 Monolignol Biosynthesis Gene Families AT3G53140 51.709 5.47e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1409 - - ccaj:109819366 293.123