Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1407 ATGGAAGGAAAGAAAGTGTTTCAGTCCCAAAACAAATCAAGATTGGCCATCTTATCTCTGTCGAATATGATGAGTGTGCCAAGTTCGGTTGTTGCCGTCATTCAGCTGAAAGTACCGGATGCTATATTTCAAGGAGGAAGCAACGTTGCCCTATCCGCCGCAGAGATTCTGGCGGTAGCTCTTCCGAATGGCGGAGGCGAACCGGATAATCTGGAACGTATTCTTAGGCTGTTAACCTCGTATGATATATTCGAGGAACATTTATGCAGCAACGGTGTAAGGAAATTCTCCCTCACGGAAATCGGCAAATGTCTGGCCACAGATGAAGAAGGACTTTCTTACTCTCCATACGTGCTCCAGCACAATCAAGATGCATATATGAGAGCTTGGCCTTGTCTCAAGGACGCGGTGGAGAACCCGTCAGTAGAACCGTTCCGGAAGGTGAACGGAGAGCATGCCATGAAGTATTACACAAACCCTAATCAGATAGCTTTATTTAATAAGGCTTTTATTGGAATGACTAGTCCTTTCATGAGAGAAGTGTTGGAGTTCTATGATGGTTTCAAAGAGGTGCAAACTTTGGTAGATGTTGGTGGCAGTACTGGTGTTTCTCTATCCTTGATTATGGATAAGTTTCCCAACATAACTAAGGGAATCAATTTTGACCTCCCACAAATTCTGGCTAGTGCACCCCAACTTCCAGGAATAACCCATGTTGCTGGTGATGCTACTGAGTTTGTTCCTTCAGGAGATGCTGTCATGATGAAGTGGCTATGTTCGGGGTTCTCAGACGATGAATGCAGGAAGATGATGAAGAACTCTCATAAGGCACTTCCAGCAGATGGAAGATTGATAATATGCGACCCAGTGTTACCGGAGTTGACGGATGAAAGCACGAGAACAAAGGCAATACTTGGTGGTGATGTATTTATGATGACTATGTATGGTACAAAGAAGACTCGAACTGAGAAGCAGTTCAAAGAACTAGGTATTGCTGCTGGTTTTTCGAGATTCAGTGTATTCTATATTGACTCGTATCTGGTGTTCATGGAGTTCCACAAGTAA 1065 0.4394 MEGKKVFQSQNKSRLAILSLSNMMSVPSSVVAVIQLKVPDAIFQGGSNVALSAAEILAVALPNGGGEPDNLERILRLLTSYDIFEEHLCSNGVRKFSLTEIGKCLATDEEGLSYSPYVLQHNQDAYMRAWPCLKDAVENPSVEPFRKVNGEHAMKYYTNPNQIALFNKAFIGMTSPFMREVLEFYDGFKEVQTLVDVGGSTGVSLSLIMDKFPNITKGINFDLPQILASAPQLPGITHVAGDATEFVPSGDAVMMKWLCSGFSDDECRKMMKNSHKALPADGRLIICDPVLPELTDESTRTKAILGGDVFMMTMYGTKKTRTEKQFKELGIAAGFSRFSVFYIDSYLVFMEFHK* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1407 354 Gene3D Vaccinia Virus protein VP39 111 354 IPR029063 -
Psa3g1407 354 SUPERFAMILY "Winged helix" DNA-binding domain 11 108 IPR036390 -
Psa3g1407 354 Pfam O-methyltransferase domain 130 336 IPR001077 GO:0008171
Psa3g1407 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 354 IPR016461 GO:0008168
Psa3g1407 354 PIRSF O-mtase 2 354 IPR016461 GO:0008168
Psa3g1407 354 PANTHER O-METHYLTRANSFERASE 7 353 IPR016461 GO:0008168
Psa3g1407 354 PANTHER OS02G0823400 PROTEIN 7 353 - -
Psa3g1407 354 Gene3D - 3 110 IPR036388 -
Psa3g1407 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 347 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1407 Psa-Chr3 126328304 126329924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1407 8 354 Monolignol Biosynthesis Gene Families AT3G53140 53.258 4.13e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1407 - - ccaj:109819366 429.869