Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1403 ATGACGAATCAAGTTGTGAGAGTGAAGAGAGAGACGATTGCAGCATGCATGACTTGCCCACTCTGTAACAAGCTGTTCAAACAAGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAATTTACTGATGAGGATTTGGAATGCTGTCCAGAATGCAACATTGATTTGGGCTGTGTTCCACTTGAGAAACTAAGGCCGGACCATACTAAGCAAGATGTAAGGGCCAAAATTTTCCCTTTAAAGGGAAGAAAAGTGAAAGAACCTGAGGTTGTCGCGGCTTCAGTACCATTGCCAGCTAAAAGAAAAGAGAGATCTCTTTCATCTTTGGTGGTCAACACACCAAGGGTATCAGCGCAATCAACGATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGCAGTATGCGGTCCTCTAGCTTTTCATTTGAAAAGTCGATTAAGAAAGAGGAAGCATTATTGGACGACCGTCTCGGGAGTTCAAGCTCACCTGAAACTTCAAATAAGTTGCGCCAGAACAATGGACAGAGCGAGGGTAGTCAATCCACGCCAAATAAAGAAACAGAGAATGGTGCTGAAACATGGGATGCAAAGTTGGATCTTTGGAAACCGCTGAATTGTTTAGTGGAGGTTGCAAGCAGGACTAAATCTTTCAAGTCTAATACACAAGGTTCCACTGCTAAACTTGAACCCATTCAAGTAAATGAAAGTGACTCTCAAGTGCAGAAAATCAAAAATAAGGAAAATAAGCGCAAGGCAAGAGTTGAGGATGAAAAAAATAGCCCTTTTCCAGTTTCTTCAGACACAGCAAAACCCAATAAGTTGCGCAGAGTACGCAGGAAAAAGGAAACTTTTGGAGAATCGGGCATATCACCCCAAGCTGTGGTGGATTCTACCAGCAATAAACTCTTTATGAGTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCGTTGCCACAAATTCCTGCCAGTTATCTGAGAATAAAGGATGGAAGCGTACCTGTCTCGTTCATCCAAAAATACCTAATGAAGAAACTAGATCTGACGAGTGAAACTGAGATTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGAAACTACATAGTTTGGTTGAGTTGTGGCTGGATTCAGCAGCATCTGCATCAGACCGAATTCCGGCGATTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTAGCCTATGCTCGGAAGACTCCACATCCACACTCTTGA 1284 0.4283 MTNQVVRVKRETIAACMTCPLCNKLFKQATTISECLHTFCRKCIYDKFTDEDLECCPECNIDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVKEPEVVAASVPLPAKRKERSLSSLVVNTPRVSAQSTMTGRRTKPTRKASSMRSSSFSFEKSIKKEEALLDDRLGSSSSPETSNKLRQNNGQSEGSQSTPNKETENGAETWDAKLDLWKPLNCLVEVASRTKSFKSNTQGSTAKLEPIQVNESDSQVQKIKNKENKRKARVEDEKNSPFPVSSDTAKPNKLRRVRRKKETFGESGISPQAVVDSTSNKLFMSGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSVPVSFIQKYLMKKLDLTSETEIEIKCMGQPVLPTLKLHSLVELWLDSAASASDRIPAIIGSSAKDFVMVLAYARKTPHPHS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1403 427 MobiDBLite consensus disorder prediction 113 149 - -
Psa3g1403 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 421 IPR044807 GO:0004842
Psa3g1403 427 MobiDBLite consensus disorder prediction 163 198 - -
Psa3g1403 427 MobiDBLite consensus disorder prediction 248 268 - -
Psa3g1403 427 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 IPR018957 GO:0046872
Psa3g1403 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Psa3g1403 427 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Psa3g1403 427 MobiDBLite consensus disorder prediction 223 247 - -
Psa3g1403 427 SMART ring_2 19 59 IPR001841 -
Psa3g1403 427 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Psa3g1403 427 MobiDBLite consensus disorder prediction 113 150 - -
Psa3g1403 427 SUPERFAMILY RING/U-box 14 78 - -
Psa3g1403 427 MobiDBLite consensus disorder prediction 166 197 - -
Psa3g1403 427 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 421 - -
Psa3g1403 427 MobiDBLite consensus disorder prediction 223 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1403 Psa-Chr3 125959625 125964795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1403 3 343 C3H Transcription Factor Family AT2G30580 52.601 2.24e-107 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1403 K16277 - gmx:100793731 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1403 3 125959625 125964795 Psa3g1403 3 125959625 125964795 ECH
Psa3g1403 3 125959625 125964795 Psa6g1333 6 60239531 60241297 ECH
Psa3g1403 3 125959625 125964795 Psa6g1333 6 60239531 60241297 PCT