Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1395 ATGCAGACTTCCCATTTCAGAGGTGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGTGATCCATGGAAAAAGACCCGCAAGTGGCTAGGCACTTTCGACACAGCAGAAGAAGCCGCCAGAGCCTACGACGATGCTGCCAGGGCCCTCCGTGGACCCAAAGCCAAGACCAACTTCTCATACTTCGTCACTCCTACGATTCTTCCAATGCATCCAACCCTCGACGGTGGTAATGGGAGACATGTCGCGTTTTGGGGTCCTCCGGTTTGTTTCACGGCGGGTGCTCCGGTGAGGTCGGAATACAAAGGTTACAAGTTGGAGAATATTGTGGCGAATAAGGGGAAGGTGGAGGAGAAGAAGAAACCGTTCTTGTTTGACCTTAACTTACCGGCACCGCTTGTTTGA 411 0.5426 MQTSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFSYFVTPTILPMHPTLDGGNGRHVAFWGPPVCFTAGAPVRSEYKGYKLENIVANKGKVEEKKKPFLFDLNLPAPLV* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1395 136 Gene3D AP2/ERF domain 4 63 IPR036955 GO:0003700|GO:0006355
Psa3g1395 136 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Psa3g1395 136 PRINTS Ethylene responsive element binding protein signature 28 44 IPR001471 GO:0003700|GO:0006355
Psa3g1395 136 ProSiteProfiles AP2/ERF domain profile. 5 62 IPR001471 GO:0003700|GO:0006355
Psa3g1395 136 Pfam AP2 domain 4 54 IPR001471 GO:0003700|GO:0006355
Psa3g1395 136 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 117 - -
Psa3g1395 136 SUPERFAMILY DNA-binding domain 4 63 IPR016177 GO:0003677
Psa3g1395 136 CDD AP2 4 61 IPR001471 GO:0003700|GO:0006355
Psa3g1395 136 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 117 - -
Psa3g1395 136 SMART rav1_2 5 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1395 Psa-Chr3 125509868 125510821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1395 5 61 AP2-EREBP Transcription Factor Family AT1G50640 89.474 4.24e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g1395 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1395 K09286 - gmx:100816599 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1395 3 125509868 125510821 Psa3g1395 3 125509868 125510821 ECH