Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1388 ATGGCGAGTGGGAGGTTTTGTAAGGATGAAGAAGACAAGGCTATGTTGGAATCTGTATTGGGTACTGATGCTGTTGGATTTTTTAGCGCAGCGGTTTCGAAACATGTTTTTTCTGATGTTATTGTTCCGCCGAATCTGGATACTGGTATTCATAAAAGGCTGTGTCACATTGTTAAGGGTTCTAGGTGGAATTATGCGATTTTGTGGCAGGTTGCGGGTTTGAAATCCGGTGGGTATGTGTTGAAATATGGGGAGGGACATTGTCAGGATCCTGTTGGGGGTCAGAGGAATGAACAAGAAAGGGAGAGAGATGAAGTTAGGAGGAGGGTGTTGGGGAGAATTCATGCTTCCTGGGGTGGATCTAACTCGATTGAGAATGTTTATAAGAAATTGGAGGATGTTTCGGATTTGTATATGCTTTACTTGACCTCTGTGTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGTAGTTCTTTTAAGTGTAGTAAACCGACTTGGTCTTCTGATGCTGGTAGTTGTTTGAAGCAGTATGAATCGAGGTCGTTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGCTTTTGTTCCTCTCAAGGCGGGGGTTGTCGAGCTTGGTTCGATGGAGATGGTGCCTGAAGAGCAGGGCTTTTTGGATATGGTTCGGGCAACGTTTGGAGAATCTACTTCTGGACAGGCTAAGGCGGCACCAAAGATTTTTGGGCGTGAGTTAAGCTTAGGGGGAGATGCAAAATCTCAGTCTATTACTATTAGTTTCTCCCCGAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTACGAAGTACAAGCGCTTGGGCCGAACCATGCTTATGGTAATTCTTCAAATGGTGGTGTAGGAGACATTAATGAGGCAAAAATGTTCCCTCAGTTAGGTCAAATGGTTCCTGGGAATTTCACTTCTCAAGCAAGGGTTTCTTCTACAGATTTGGGTAATGAAGAGTCATCCTCACCTCTTGGAGACGAACGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCACTGAATCATGTTGAAGCGGAGAGGCAAAGACGGGAGAAGCTTAACCAGAGATTTTATGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGTGATGCTATCACCCATATCACCGATCTCCAGAAGAAGATCAAAATTTTGGAAACTGAGAAAAACATGGCTAAGGGCTCGCAGTTGCCATTGCAAGATATTGATTTTCAGGCTAGACAGGATGACGCCGTTGTGAGAGTGAGTTGCCCCTTGGATATTCACCCGGTTTCCGGAATTGTTAAAGTGTTGAGAGAACATCAAATTGTTGCTCAAGAGGCAAATGTTTCAACTGCACAGGATAAGGTAATTCATACTTTCTCCATCAGAACTCAAGGAGGGGAAGCAGCTGCTCTACAGTTGAAAGAAAAGCTTGAAGCATCTTTATCCAAAAATTAG 1509 0.4374 MASGRFCKDEEDKAMLESVLGTDAVGFFSAAVSKHVFSDVIVPPNLDTGIHKRLCHIVKGSRWNYAILWQVAGLKSGGYVLKYGEGHCQDPVGGQRNEQERERDEVRRRVLGRIHASWGGSNSIENVYKKLEDVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCSKPTWSSDAGSCLKQYESRSFLAKSAGFQTVAFVPLKAGVVELGSMEMVPEEQGFLDMVRATFGESTSGQAKAAPKIFGRELSLGGDAKSQSITISFSPKVEDDSGFTSDSYEVQALGPNHAYGNSSNGGVGDINEAKMFPQLGQMVPGNFTSQARVSSTDLGNEESSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKILETEKNMAKGSQLPLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVLREHQIVAQEANVSTAQDKVIHTFSIRTQGGEAAALQLKEKLEASLSKN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1388 502 MobiDBLite consensus disorder prediction 319 363 - -
Psa3g1388 502 Gene3D - 345 417 IPR036638 GO:0046983
Psa3g1388 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Psa3g1388 502 MobiDBLite consensus disorder prediction 331 363 - -
Psa3g1388 502 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Psa3g1388 502 Coils Coil 398 418 - -
Psa3g1388 502 CDD ACT_UUR-ACR-like 450 501 - -
Psa3g1388 502 CDD bHLH_AtAIB_like 349 426 - -
Psa3g1388 502 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Psa3g1388 502 PANTHER MYC 5 501 IPR045084 GO:0003700|GO:0006355
Psa3g1388 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Psa3g1388 502 PANTHER TRANSCRIPTION FACTOR BHLH3 5 501 - -
Psa3g1388 502 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1388 Psa-Chr3 124977813 124980543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1388 5 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.713 5.80e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1388 bHLH-MYC_N 3.8e-37 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1388 - - gmx:100819968 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1388 3 124977813 124980543 Psa3g1388 3 124977813 124980543 ECH