Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1382 ATGCCTCTTATTCCCATTGTCCCACTTCCATCTCACTCACTCCCTTCTCAGATTTTTGTATTTCCTAGTGTGCCCGTGTGCCTACAAATTTTTATTCCCTTCTCCTTTTCACTTTCTCACACACCTAACACACTCTTTCTTATCATGGCTTCTTCAAATGGAACTACCTCTGGAACTGGTTCTCCTTGTGGAGCATGCAAATTCCTCAGAAGAAAATGTGCACCTGATTGCATTTTCGCACCTTACTTCTGCTCAGAACAAGGCCCTGCAAGATTTGCAGCCATTCATAAAGTTTTTGGTGCCAGCAATGTTTCTAAGCTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACTATTGCTTATGAGGCTCAAGCTCGTATTAGAGATCCTGTTTATGGCTGTGTCTCACACATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGACACAACTGATTCAAGTGAAATGTCAGCTGTCACAAAACATAGAGAATAGTAATAATAATAATAATCAATGGACAGGGAATAATGATAATAATGTTGTTGGAACACAACAAATGAATTATCATCCTTTTTGTCCAACTTACATGAACCCTATATCTCCTCAAAGCTCACTCGAGTCATCAGTTGATCATAGCGGAAGCATGAATAATGATGGAATGATGAACATGCAAGATGTACAAAGTAGTAGAGATGATTTTTTATTTCAAGTTTGTAATAGCTCTAAGAAAAGAATGTCATATAACAATAGTAATAGTCATGACTTGGGTGAGTTGCAAGAATTGGCTCTTAGGATGATGAGGAACTAA 822 0.3856 MPLIPIVPLPSHSLPSQIFVFPSVPVCLQIFIPFSFSLSHTPNTLFLIMASSNGTTSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQTQLIQVKCQLSQNIENSNNNNNQWTGNNDNNVVGTQQMNYHPFCPTYMNPISPQSSLESSVDHSGSMNNDGMMNMQDVQSSRDDFLFQVCNSSKKRMSYNNSNSHDLGELQELALRMMRN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1382 273 PANTHER LOB DOMAIN CONTAINING PROTEIN 49 272 - -
Psa3g1382 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 49 272 - -
Psa3g1382 273 Pfam Lateral organ boundaries (LOB) domain 62 159 IPR004883 -
Psa3g1382 273 ProSiteProfiles LOB domain profile. 61 163 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1382 Psa-Chr3 124038399 124040217 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1382 48 273 AS2 family AT2G42430 54.217 1.02e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa3g1382 LOB 2.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1382 K13944 - gmx:100801508 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1382 3 124038399 124040217 Psa3g1382 3 124038399 124040217 ECH
Psa3g1382 3 124038399 124040217 Psa6g1328 6 59761066 59762590 PCT