Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1376 ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGAGAAGAAAATGTATTAGAGGTTGTGTTTTTGCACCTTATTTTTGCCATGAACAAGGTGCTACTCATTTTGCAGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAACTTCTTGCACACCTCCCTGTGAGTGATCGTTGTGAAGCTGCTGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGATGTGTTTCTCATATTTTTGCACTTCAACAACAGGTGGTAAATTTACAAGCACAACTAGCTTATATGAGGGAACAAGCAGCTCAAAGGTGTCTCAATACTTCATTCTCTGAAAACCCTAATGAGAAAAGCTTTGTAAAACCTAGTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAAATGGAAAATGACTCCAACATGAGTCCTCAACTTCATCCCAACTTGTCCTCCTCCACTACCAACCTCTCAACAACACCACAATGTTATAATGGGAATGCTACCACTCTCATGGACCTAAACCCTATAATTGGAAACTATGAAAATTCAGGAGCTTTAGAAGAAACCATCTCATCATTTTCTAACTTTGAAGAGAGGTGTCATAACTCAATGTCCTGTCATGACATGCAACGGCAGTGGAGTTTTCATGAAATGAATAATTTTCAGTAA 696 0.3851 MMTGSGSPCGACKFLRRKCIRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLAYMREQAAQRCLNTSFSENPNEKSFVKPSNILPQDLQSWFQMENDSNMSPQLHPNLSSSTTNLSTTPQCYNGNATTLMDLNPIIGNYENSGALEETISSFSNFEERCHNSMSCHDMQRQWSFHEMNNFQ* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1376 231 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Psa3g1376 231 Coils Coil 88 108 - -
Psa3g1376 231 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Psa3g1376 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 2 223 - -
Psa3g1376 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1376 Psa-Chr3 123194003 123195287 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1376 8 123 AS2 family AT3G58190 81.356 3.08e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa3g1376 LOB 1.4e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1376 3 123194003 123195287 Psa3g1376 3 123194003 123195287 ECH
Psa3g1376 3 123194003 123195287 Psa6g1327 6 59711469 59712821 PCT