Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1370 ATGTCACAATCTTCTTTGCCTATTGTTGCAATTGTTGTACTAACCATCTTGGCCATTGTTTTCATATTTATCAGTTACTTGATTCTTGTGACCAAATGTTACTCAAACTGGTGGCATCCATTGAGATGGATATCAATCCTACCACCTTCACAGAGTGAAGAGCCTTTCATAGCGTTCTCTCCGAGGACATGGAACCGCGGCGTTGACGAATCTGTCATCCAAGAAATCCCAACGTTTCAGTTCACGAAAGGAGAAGGCGGGGACGATCGTCCAAGTGTCAAAGGTTGTGTGGTTTGTTTGAATTCTTTTCAAGAACAAGATATGCTGAAAGTACTTCCGAATTGCAGCCACCACTTTCATTTGGATTGCATTAACATTTGGCTTCAGACAAATGCTAACTGTCCTCTATGTAGAACAAGCATTTCAGGCAACACGCAGTTTCCGACGAACAGGATCATAGCAGCACCAAGTTCTTCGCCACAGGATTCTCAGTTATTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTGATTGAATTGTGGGGAGAAGGAGAGCATAGGGGAACAATGTCTCATCATCATATGCAGCAAGAAAGAAATGAGTCAAGGGAAAGCATGGCATCATCACTGAGTAGAACTCACTCTAGAACTAGAAACATGGAGGAGGAAGAGAAGGTGGTGGAGTTGAAACCATGGAAGTGCCACCGTGTTCCCATCATGGGTGATGAGTGTATTGATGTTAGAAAAAAAGATGAGCAGTTCTCTATTCAGCCTATTAGAAGATCTTTCTCATTGGATTCTGCAAGTGATAGAAAAGCTTACTTGGAAGTTCAAGATATCATCCGACAGAATAATAGGCATCACCAAAATGAGGATTGTGACAGTGAAGATTGTAATAGTAGCAAGGGCAGAAGATCATTCTTTCCATTTCGTTATGGTAGGGGATCAAAAACTTCATTGCTTCATTGA 969 0.4159 MSQSSLPIVAIVVLTILAIVFIFISYLILVTKCYSNWWHPLRWISILPPSQSEEPFIAFSPRTWNRGVDESVIQEIPTFQFTKGEGGDDRPSVKGCVVCLNSFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNTQFPTNRIIAAPSSSPQDSQLFSNMGSDEDFVVIELWGEGEHRGTMSHHHMQQERNESRESMASSLSRTHSRTRNMEEEEKVVELKPWKCHRVPIMGDECIDVRKKDEQFSIQPIRRSFSLDSASDRKAYLEVQDIIRQNNRHHQNEDCDSEDCNSSKGRRSFFPFRYGRGSKTSLLH* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1370 322 SUPERFAMILY RING/U-box 73 145 - -
Psa3g1370 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 143 IPR013083 -
Psa3g1370 322 CDD RING-H2_PA-TM-RING 96 138 - -
Psa3g1370 322 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Psa3g1370 322 MobiDBLite consensus disorder prediction 189 223 - -
Psa3g1370 322 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 320 - -
Psa3g1370 322 Pfam Ring finger domain 96 138 IPR001841 -
Psa3g1370 322 PANTHER RING-H2 FINGER PROTEIN ATL16 2 320 IPR044600 GO:0016567|GO:0016740
Psa3g1370 322 SMART ring_2 96 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1370 Psa-Chr3 122894020 122894988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1370 2 287 C3H Transcription Factor Family AT1G04360 42.857 1.06e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1370 K19041 - gmx:100809883 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1370 3 122894020 122894988 Psa3g1370 3 122894020 122894988 ECH
Psa3g1370 3 122894020 122894988 Psa6g2419 6 177452926 177454551 PCT