Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1369 ATGGAAGATGAAATAGAGAAAGGTGAATTACCAAAGCAAATAAAGTATAGAGGAGTGAGAACAAGGCCATGGGGAAAATTTGCGGCCGAGATTCGAGATTCGACTAGGCATGGTGCTCGAGTTTGGCTCGGTACATTCAACACGGCTAAAGAAGCCGCAAGAGCTTATGATCGCGCTGCGTTTGATATGAGAGGTTCTTCGGCTATTCTAAACTTTCCTCATGAACATTTTCCAAGCCATGTAGCCTATAATCCTACTAAGTCCTCTTCTTTATCCTCCACCTCATACACTTCTTCCTCGTCGTCGTCATCGTCATCATCTTCAAAAATTAAATCAGAAGGTGGTGAACAAGTCATAGAGTTTGAGTATCTAGATGAAAAATTGTTAGAGGAACTCTTGGATTGTGAGAATACCATCAATCACAACTAA 429 0.4126 MEDEIEKGELPKQIKYRGVRTRPWGKFAAEIRDSTRHGARVWLGTFNTAKEAARAYDRAAFDMRGSSAILNFPHEHFPSHVAYNPTKSSSLSSTSYTSSSSSSSSSSSKIKSEGGEQVIEFEYLDEKLLEELLDCENTINHN* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1369 142 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 MobiDBLite consensus disorder prediction 88 114 - -
Psa3g1369 142 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Psa3g1369 142 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Psa3g1369 142 PANTHER - 11 134 - -
Psa3g1369 142 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 MobiDBLite consensus disorder prediction 88 113 - -
Psa3g1369 142 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Psa3g1369 142 PANTHER DNA-BINDING DOMAIN 11 134 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1369 Psa-Chr3 122867176 122867696 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1369 12 136 AP2-EREBP Transcription Factor Family AT3G23230 60.000 7.11e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g1369 AP2 9.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1369 - - mtr:MTR_7g096700 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1369 3 122867176 122867696 Psa3g1369 3 122867176 122867696 ECH
Psa3g1369 3 122867176 122867696 Psa6g1155 6 45107283 45109502 PCT