Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1364 ATGGATTTTTACGCTTCCGCAAATTTATTTGATATTTCATGGGAAGATTTGTTTATGTTCAATAATATTGATTCCAATTCTTCATCCTCTAGTGATGATCATATGGATTTACAAGAATTCAACTCCAATATTAAAGAAGAAAATTCACCACCACCACCACCACCACAAACCCTAACTCAAAAGCAACCATCAAGTAAACGAGAGAAGAGGCTTTATAGAGGTGTAAGGACACGACCATGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAATGGTGTTCGAGTATGGATCGGAACATTCGATACACCTGAAGCAGCTGCTTTGGCTTATGATCAAGCAGCTTTCTTAACAAGAGGATATAGGGCAATCCTTAACTTCTCAGAACATGTTGTCAAGGAGTCTCTCCAAAACATGAACTTTAAGAAGTTGTTAAACCGGGGTTGTTCGCCTTTGTTGGAGCTAAAAAAGATGCATGTCTTGAGAACAAGATCTACTAAGAGTTGTAGTAAAAAGGGTAAAAAGGATTCAAAGAATGGAGGGTTGAATATTCACAATGCTGAAAATGTTTTGGTGTTGGAAGATATGGGAGCTGAGTATCTAGAGCAACTTTTGATGAGCACCATTTGA 633 0.3807 MDFYASANLFDISWEDLFMFNNIDSNSSSSSDDHMDLQEFNSNIKEENSPPPPPPQTLTQKQPSSKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGYRAILNFSEHVVKESLQNMNFKKLLNRGCSPLLELKKMHVLRTRSTKSCSKKGKKDSKNGGLNIHNAENVLVLEDMGAEYLEQLLMSTI* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1364 210 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Psa3g1364 210 CDD AP2 72 131 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 MobiDBLite consensus disorder prediction 29 71 - -
Psa3g1364 210 PANTHER DNA-BINDING DOMAIN 15 208 IPR044808 GO:0003700|GO:0009873
Psa3g1364 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 15 208 - -
Psa3g1364 210 Pfam AP2 domain 72 117 IPR001471 GO:0003700|GO:0006355
Psa3g1364 210 Gene3D AP2/ERF domain 71 131 IPR036955 GO:0003700|GO:0006355
Psa3g1364 210 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1364 Psa-Chr3 122620684 122621538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1364 56 209 AP2-EREBP Transcription Factor Family AT3G23240 51.299 2.40e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa3g1364 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1364 K14516 - gmx:100818907 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1364 3 122620684 122621538 Psa3g1364 3 122620684 122621538 ECH
Psa3g1364 3 122620684 122621538 Psa6g2871 6 234733054 234735530 PCT