Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1360 ATGGGGTCGAATGTTAATGTTTCCGAACCAAAAATGGATAGCAAAAAATTTGATTTTCCGCCCGGTTTTCGATTTCACCCGACCGACATAGAGCTCATAAATCATTACCTTGTTAAGAAGGTTCATGACAATAGCTTCTCTGCTATTGCTATTGCTGAAGTTGATATGAACAAGTGTGAACCATGGGATTTGCCAGAATTGGCAAAAATGGGAGAATCAGAATGGTATTATTTTTGTGTGAGGGACAAAAAATATTCGACTGGTCAAAGAGCAAATAGGGTCACTAATGTTGGTTATTGGAAGGCATCAGGAAGAGATAAGGAGATTTATGATAAAAATTTATTGATTGGGATGAAGAAAACATTAGTTTTCTATAAAGGAAGAGCTCCAAATAGTGTAAAAACTAGTTGGGTCATGCATGAATATAGATTGGAGGGTAACACACTTTCTAAGGACATTTTATCAAAGAGAGGAAAGGGTGAATGGGTTATCAGCAGAATCCATGAGAAGGAAAGATCTGAAAAGAAAATGTATGGTCCAAAACTTGGAAGATTTAACTCCTTTAGAGAAGAACCATCAAATACTAATGAATTTAATTTGATGGATTCTTCTCCACACACTAATGGTGAGTCCTCTTATGTGATCAATCCATTCACCATTCCAAATCAAACACAAGACAACAATATAGTTGGCAACAATGAAGCTAGTATCATGAATATTTCATTCTCTTCAAAACAAATTGATGATTACCCTTTCGTTGAAGAAACACAAAACCATTTCTTGCCCCAAGAACAAACTCTGTTGAGGATGCAATTGGAGAATGAAAATTATGGATTAAATTCAATGCAAAGTCTTCAACATGATTTTTCTTTTGGGAGGGATCTTGATGCTGATATCTCATCAATTATATATGAAGATGACATGTTTCCACCGTGGTGTGGAAATCAAGAATTGCTACCCGATTTTACTGGTCCTGTGATCACCGATAACTTGTGGAATTATTAA 1005 0.3562 MGSNVNVSEPKMDSKKFDFPPGFRFHPTDIELINHYLVKKVHDNSFSAIAIAEVDMNKCEPWDLPELAKMGESEWYYFCVRDKKYSTGQRANRVTNVGYWKASGRDKEIYDKNLLIGMKKTLVFYKGRAPNSVKTSWVMHEYRLEGNTLSKDILSKRGKGEWVISRIHEKERSEKKMYGPKLGRFNSFREEPSNTNEFNLMDSSPHTNGESSYVINPFTIPNQTQDNNIVGNNEASIMNISFSSKQIDDYPFVEETQNHFLPQEQTLLRMQLENENYGLNSMQSLQHDFSFGRDLDADISSIIYEDDMFPPWCGNQELLPDFTGPVITDNLWNY* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1360 334 ProSiteProfiles NAC domain profile. 19 170 IPR003441 GO:0003677|GO:0006355
Psa3g1360 334 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Psa3g1360 334 SUPERFAMILY NAC domain 16 170 IPR036093 GO:0003677|GO:0006355
Psa3g1360 334 PANTHER ANAC079/ANAC080/ATNAC4 PROTEIN 6 331 - -
Psa3g1360 334 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Psa3g1360 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1360 Psa-Chr3 122592823 122595599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1360 17 334 NAC Transcription Factor Family AT5G07680 43.465 1.37e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa3g1360 NAM 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1360 - - cam:101488836 412.535