Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1335 ATGGGAAGAGCTCCATGTTGTGAGAAAATGGGGTTGAAGAAAGGACCATGGACTCAAGAAGAAGATAGAATCCTCATCAATCACATAAACACTTTTGGCCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGTTTGTTAAGATGTGGGAAGAGTTGCAGACTCAGATGGGCGAATTATTTGAAACCGGATATCAAACGTGGTAATTTCACCAAAGAAGAAGAGGATGCAATAATCAATTTACATCAAATGTTGGGAAACAGATGGTCAACTATAGCAGCAAGATTACCTGGTCGAACAGACAACGAGATAAAAAACGTATGGCACACACATTTGAAGAAGAGGCTGCCACAAAACCAACAAGCCAACGAAACCTTAAAACAAAGTAAAAAACAAAGCAAGTTGGACTTTGATGTCGGTGCCAAACAAGAACAAAATGATGATGAGAAGCCGCAATTTTTGTCTTCTGATAAATCTAGCAGTGAGGGAAATGGTGCTATGGACATTGGTGCTGATGATTATGCATTTCGAGGTGGTGATGAAGGTGTGTTTAGTTCTGGTTCGTTGAGTTTATGCGAAGATATGGATTTTTGGCATGATGTTTATGCGAGAGCTGAGGAAATAACTGAGTTATTAGAATTATGA 645 0.3984 MGRAPCCEKMGLKKGPWTQEEDRILINHINTFGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHQMLGNRWSTIAARLPGRTDNEIKNVWHTHLKKRLPQNQQANETLKQSKKQSKLDFDVGAKQEQNDDEKPQFLSSDKSSSEGNGAMDIGADDYAFRGGDEGVFSSGSLSLCEDMDFWHDVYARAEEITELLEL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1335 214 CDD SANT 69 112 IPR001005 -
Psa3g1335 214 PANTHER TRANSCRIPTION FACTOR MYB15 1 146 - -
Psa3g1335 214 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa3g1335 214 CDD SANT 16 61 IPR001005 -
Psa3g1335 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 146 - -
Psa3g1335 214 SMART sant 66 114 IPR001005 -
Psa3g1335 214 SMART sant 13 63 IPR001005 -
Psa3g1335 214 MobiDBLite consensus disorder prediction 114 164 - -
Psa3g1335 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa3g1335 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa3g1335 214 Gene3D - 11 67 - -
Psa3g1335 214 MobiDBLite consensus disorder prediction 114 128 - -
Psa3g1335 214 Gene3D - 68 145 - -
Psa3g1335 214 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa3g1335 214 MobiDBLite consensus disorder prediction 129 155 - -
Psa3g1335 214 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa3g1335 214 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa3g1335 214 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1335 Psa-Chr3 120672840 120674300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1335 1 203 MYB Transcription Factor Family AT2G31180 55.825 3.28e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa3g1335 Myb_DNA-binding 6.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1335 K09422 - gmx:100802214 263.848