Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1332 ATGGAACCTCTTTCAGCTCCACCTGGTTTTGTATCCCTAACATCTTTTTTCCTGAAAAAGGATGACAAGGTTGAGAAAACCAGTAAGTCCGACCCGATTCCTGCAAAGACTAAACCTGAGATGGATGACAATACTTCATACAACCAGATTAATGCACATCGGCCATGGATAGTATTGGACCAGAACAGGTGCAAATCCGAGGAATCATGCGCGGAGCATCTTCCTAGGGTTAAATTGAATCCTCCTAATAAATTTTCTCGTCCAAAAGGAACCGTATACGGATGTCCAAACTGCAGTAATTGTTTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGAAGAGAAGTTCTCGAAGAAGCTCCTATTTTCCATCCAACAGAAGAGGAGTTCAAAGATACACTTGGATATATTGCAAGCATACGTTCCCGAGCAGAACCTTATGGAATCTGCCGTATTGTCCCTCCTAAAAGCTGGAAACCGTCATGTACTCTTGAAGAAAAGAATGTATGGGAAAACTCTGAATTTGTTGCCCAAACTCAGCGAATTGATGGGCACCAAGTTCAGCATGCACAAGCAATTATGGCTAGCTCTTATGATACTACTAAAACCAAGAGAAGAAAAGTGAATAAAGTAGAGATGGACTCTCATCTTGGTAATAGAAGCACTTGCACCTCAAATAACGGAAATGTTGAAGGCTGTGACGATGAGCCTGAATCCGGTCCTAAATTCACTCTCAAAACGTTTAAGAAATTGGCAGATGAATTCAAGATCCAATACTTCAACTACAAGGATAAGATTAAGATTATGGGTTCTCTGCTTTCTTTTGAAAACCCTGAAGCTGCACATAGATTTTCCCCTAGGATACATGTGGGAATGTGCTTTTCTCCACTTAAATGGAAAGTTGAAGAGCACCAATTATACTCATTATGTTACATGCATATGGGTGAACCCAAAGTATGGTATAGTGTCCCAGGAAGATCTGCTGATCACTTTGAAACAGTTTGGAAGAAGTATCTCGGAGATATGAATGCAGGAAAACCTGATTTGCATAATCATCTGGCTATGCAGTTATCCTGCTCGGTATTGAAGGCAGAGGGTGTCCCGCAAGTTTTGCTCCTCTGGACAAGGGAAGCTGTGAGGGCCCGCTGGGAAATTGATATACTTATGAAGAGCACGCCCGACAACTTAACGTGTAGAGATGCATATCAAAGAAATGGGATCTTACCAAAAGCTTTGAATTCTCGCATCAGGAGTGAAAATTTGAAGAGGAAATTTATTTCCATTTCTTTCAAATCACAAAAAATGGATGAAAACTTTGATGCCAGTTGTAAAAAGGAATGTAGCATATGTCTGCGTGATTTATTTCTTTCAGCTGTTGGTTGTTCGTGTTCAGATGACAAGTTTGTGTGTCTTGATCATGCAATGAAGCTTTGTTCTTGCCCTTGGACAGACAAAATTCTCCTCTACCGTTATGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGGATGGAAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTCGGTTTAACTGTGCGCTCAGTTGCCTCCAAGAGATCAAAACAAACCCCAGAGAAAGTAAATGGTTCAGTAGATTCGTTGAAAGAACCTATATTGCAGTCACCGCTGGATTCATTCAACAAGTGGAAACAGCTTAAATCGCAGGCAACACCAAATGCTTTGGCGGGGAAACAGAGCGAAATGGCCTTCCAAGCCAAAATATCCCCTGGTAGCACTAACAGTAATTTGAATGTCATTCATCCAAAAAATAACTCAACTTTACTTCATTCAGCAATATTGAATGAGATCAAAGCTAAAGAGGAAATGGCGGGGCACAATTCTGCTGCAAAAAGCATTGGTGAAGGAAGTAATTCTGCTGGGATCAAACCTGATAATAGCAAGGCAATTGGTGATAACCTCACAGTTTCAAAGAAAGTAGGAGACTCAAAAGTTTCAGAAGTTTCATCAACTCCAGGCTCCGGTTTCTTGTCTTTTCTACGAGAAGACATTTTTGTTGAAGATTCATCTGCTGATACTTCAAGCTCTTCTAGTTCTTCAGAAACTGACAAGGTGTAG 2109 0.4078 MEPLSAPPGFVSLTSFFLKKDDKVEKTSKSDPIPAKTKPEMDDNTSYNQINAHRPWIVLDQNRCKSEESCAEHLPRVKLNPPNKFSRPKGTVYGCPNCSNCLKVTARWHPEDARREVLEEAPIFHPTEEEFKDTLGYIASIRSRAEPYGICRIVPPKSWKPSCTLEEKNVWENSEFVAQTQRIDGHQVQHAQAIMASSYDTTKTKRRKVNKVEMDSHLGNRSTCTSNNGNVEGCDDEPESGPKFTLKTFKKLADEFKIQYFNYKDKIKIMGSLLSFENPEAAHRFSPRIHVGMCFSPLKWKVEEHQLYSLCYMHMGEPKVWYSVPGRSADHFETVWKKYLGDMNAGKPDLHNHLAMQLSCSVLKAEGVPQVLLLWTREAVRARWEIDILMKSTPDNLTCRDAYQRNGILPKALNSRIRSENLKRKFISISFKSQKMDENFDASCKKECSICLRDLFLSAVGCSCSDDKFVCLDHAMKLCSCPWTDKILLYRYEISELEVLHQALDGKLSAVYKWAKEDLGLTVRSVASKRSKQTPEKVNGSVDSLKEPILQSPLDSFNKWKQLKSQATPNALAGKQSEMAFQAKISPGSTNSNLNVIHPKNNSTLLHSAILNEIKAKEEMAGHNSAAKSIGEGSNSAGIKPDNSKAIGDNLTVSKKVGDSKVSEVSSTPGSGFLSFLREDIFVEDSSADTSSSSSSSETDKV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1332 702 Pfam jmjN domain 122 155 IPR003349 -
Psa3g1332 702 MobiDBLite consensus disorder prediction 23 42 - -
Psa3g1332 702 Pfam C5HC2 zinc finger 448 498 IPR004198 -
Psa3g1332 702 ProSiteProfiles JmjN domain profile. 121 162 IPR003349 -
Psa3g1332 702 Gene3D Cupin 268 374 - -
Psa3g1332 702 Gene3D Cupin 106 267 - -
Psa3g1332 702 MobiDBLite consensus disorder prediction 23 38 - -
Psa3g1332 702 Pfam JmjC domain, hydroxylase 290 369 IPR003347 -
Psa3g1332 702 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 371 615 - -
Psa3g1332 702 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 67 268 - -
Psa3g1332 702 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 268 369 - -
Psa3g1332 702 PANTHER LYSINE-SPECIFIC DEMETHYLASE 371 615 - -
Psa3g1332 702 PANTHER LYSINE-SPECIFIC DEMETHYLASE 67 268 - -
Psa3g1332 702 PANTHER LYSINE-SPECIFIC DEMETHYLASE 268 369 - -
Psa3g1332 702 SMART JmjN_1 120 161 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1332 Psa-Chr3 120002887 120007062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1332 351 528 JUMONJI Transcription Factor Family AT1G08620 45.000 5.24e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Psa3g1332 JmjC 5.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1332 - - gmx:100804864 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1332 3 120002887 120007062 Psa3g1332 3 120002887 120007062 ECH
Psa3g1332 3 120002887 120007062 Psa6g1224 6 50760507 50772237 ECH