Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1328 ATGATTTTGTGTCAAAATATGGTGGTGAAAAGGCTTCTACAGCTCCTCCCAACAGCCTTAGATGAATCAACTGGAAGACAGCTTCCCATTGCCTTTCTAGAGCGTGTCAAGGATGATTTTGTGTCAAAATATGGTGGTGAAAAGGCTTCTACAGCTCCTCCCAACAGCCTTAACAAGGAATTTGGGCCAAAGTTGAAGGAACACATGCAGTACTGTGTTGATCATCCCGACGAGATAAGCAAGCTTGCAAAGGTGAGAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAATATTGAAAAGGTTCTAGACAGAGGAGAAAAGATAGAGCTTCTGGTGGAGAAGACTGATAACCTTCATCACCAGGCACAAGATTTCAGGAGTTCTGGAACTTCAATACGTCGAAAAATGTGGCTACAAAACATGAAGGCAGAAGCAGATATGTTGAACCAGTCCATTTTGGAGCTTTACTCCAATCATTTGACAGGTTTTATTCCTAAGGATTTTGGTAACCTTTTGAAATTGGAAAAGTTGCTTCTTCATGTCAACAATTTGACCGGTCTTCCGTGGACGATACGACTCACCATTGCTTCTGAAACTGCTAATGCTATAGCTTATCTCCATTCTGCAATTCATCCACCAATTTACCACAGAGACATAAAATCCAGTAATATACTACTGGATTATAACTACGAATCTAAAGTAGCTGATTTTGGGCTTTCTAGGCTTGGTATGATAGAGACATCACATATTTCAACTGCTCCACAAGGGACTCCAGGTTATGTGGATCCTCAATACCACAAGAACTTCCACCTTTCTGATAAAAGTGACGTGTACAACTTCGGAGTGGTTTTGGTAGAGATTATAACTGCCATGAAAGTGGTTGATTTTGGTAGACCTCAGAGTGAGATTAATTTAGCCGAACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTAGATCCCTTCATTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCATAGTGACACAAGGCCGACAATGATGGAAGTGGCAGAAGAGCTGGAGTACATCAGACGCCGAGCATGGACAACTATGGAGGAAGCTATATGCTTGGGTTCATCGGTTGGGTCTGCCGGTTCATCCCCTCGCGATGGAAGTGAGAAGTCGGTGAATGGTATTAAGTTGAATAAAGTAGGCAAATGGAGAGGTGTTGATCCTGTCATCTTCTTTAAAGATGAATCAATTATAAAGAGCATAGAGGCATTTTATGGCATTGATGAGCAGTTCCCGTTAGACGGTCACCTTGTAACAAGAAACAGCGATACAAGCAATGTAAAAAGAATTTACTACATCTCCAAGTCAGTCAAGAATGTTCTTGAGTTGAACCTATCAGTTGGGCAGCAACTGAAAATAACTTCTGTTGGCCTAAAAATATTTGAAAGACAAAAGTCACGTGAAGGTAGATCCGTCGAATGTGCTTTCAGAATTGCTTCTGAAGGATTGCCTCTTATCCTCCCTCATATCACCAAACAGATCCTAAGTGCATCTGCTATAGATTTCAAGCATCTTCTCCAGTATAAAAATGTAAAATGTGCAGAATTTGTCGATGCCAAATTTGTTGAAATGGTGGCAAACCTAAAGCCAGGCTGTTGCGTGATCGTTCTCGGTGAAGGAAACAAAGTCTCTGCAGAGGCTCTCCAAGTGGATGAATCGTCAATAGCCATTGGATGCTGGAAGGGTCGGGCAAGTTTGACCGTGATGGTTAGTTCAATAGAATGTCAAGAACTGCTTGAAAGGCTTTTAATGCGTTTAGACAGGGAAACAGAAAAAGGGTCCTCCATGCATGAGGACAAACCATCTAATAATGTGAGATATGTAGAACAGGAATCAAATGGTAACAGCCAAGATGTGGAAGCTAATTGA 1965 0.4142 MILCQNMVVKRLLQLLPTALDESTGRQLPIAFLERVKDDFVSKYGGEKASTAPPNSLNKEFGPKLKEHMQYCVDHPDEISKLAKVRAQVSEVKGVMMENIEKVLDRGEKIELLVEKTDNLHHQAQDFRSSGTSIRRKMWLQNMKAEADMLNQSILELYSNHLTGFIPKDFGNLLKLEKLLLHVNNLTGLPWTIRLTIASETANAIAYLHSAIHPPIYHRDIKSSNILLDYNYESKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHKNFHLSDKSDVYNFGVVLVEIITAMKVVDFGRPQSEINLAELAVDRIRRGSIDEIVDPFIEPNRDAWTLYSIHKVAELAFRCLAFHSDTRPTMMEVAEELEYIRRRAWTTMEEAICLGSSVGSAGSSPRDGSEKSVNGIKLNKVGKWRGVDPVIFFKDESIIKSIEAFYGIDEQFPLDGHLVTRNSDTSNVKRIYYISKSVKNVLELNLSVGQQLKITSVGLKIFERQKSREGRSVECAFRIASEGLPLILPHITKQILSASAIDFKHLLQYKNVKCAEFVDAKFVEMVANLKPGCCVIVLGEGNKVSAEALQVDESSIAIGCWKGRASLTVMVSSIECQELLERLLMRLDRETEKGSSMHEDKPSNNVRYVEQESNGNSQDVEAN* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1328 654 CDD Longin 21 72 IPR010908 -
Psa3g1328 654 SUPERFAMILY Protein kinase-like (PK-like) 175 370 IPR011009 -
Psa3g1328 654 PRINTS Synaptobrevin signature 86 105 IPR001388 GO:0016021|GO:0016192
Psa3g1328 654 PRINTS Synaptobrevin signature 106 125 IPR001388 GO:0016021|GO:0016192
Psa3g1328 654 Coils Coil 140 160 - -
Psa3g1328 654 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 408 630 - -
Psa3g1328 654 SUPERFAMILY SNARE-like 20 72 IPR011012 -
Psa3g1328 654 CDD R-SNARE 81 139 - -
Psa3g1328 654 SMART serkin_6 104 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1328 654 MobiDBLite consensus disorder prediction 638 654 - -
Psa3g1328 654 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 81 141 IPR042855 -
Psa3g1328 654 SUPERFAMILY SNARE fusion complex 76 143 - -
Psa3g1328 654 Pfam Synaptobrevin 80 145 IPR042855 -
Psa3g1328 654 MobiDBLite consensus disorder prediction 622 637 - -
Psa3g1328 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Psa3g1328 654 Pfam Regulated-SNARE-like domain 21 62 IPR010908 -
Psa3g1328 654 ProSiteProfiles Protein kinase domain profile. 1 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1328 654 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 408 630 IPR023267 GO:0001510
Psa3g1328 654 ProSitePatterns Synaptobrevin signature. 99 118 IPR001388 GO:0016021|GO:0016192
Psa3g1328 654 Gene3D Longin domain 16 74 - -
Psa3g1328 654 Gene3D Transferase(Phosphotransferase) domain 1 174 384 - -
Psa3g1328 654 MobiDBLite consensus disorder prediction 622 654 - -
Psa3g1328 654 ProSiteProfiles Longin domain profile. 21 65 IPR010908 -
Psa3g1328 654 Gene3D - 75 145 - -
Psa3g1328 654 Pfam Protein kinase domain 196 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1328 654 SUPERFAMILY L domain-like 153 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1328 Psa-Chr3 119119114 119121758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1328 187 420 Receptor kinase-like Gene Family AT2G23450 68.803 4.31e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Psa3g1328 Pkinase 6.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1328 - - gmx:100810861 384.8