Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1327 ATGGAGCATTGGTTTTCTCACGAATTCTGTGACTCATTCCAGTTGATGGTGCATGATCTGGCCTACTATGTCAAAGGACAGAGATTACTTGGAGGTTACAAACAAGGAAGTGGTATAGTCTGCAGTTGTTGTGATATAGAGATAAACCCTTCACAGTTTGAAGCCCATGCTGGAATGGCAGCTAGACGTCAACCTTATCGTCGCATATATACTTCCAATGGATTAACGCTTCATGACATAGCTCTATCTTTGGCAAATGGTCAAAACCTTACTATGGGAGATAGTGATGACATGTGTGTAATATGCGGAGATGGAGGAGATTTGATTCCTTGCAATGGATGCCCTAGGGCCTTTCATGCCGCTTGCTTCGACTCACCCACCGTACCCGCTAGTGATTGGCATTGTCTAAATTGTAAAGATAATACTGATGATGAAGGAGGTGTGAGACCCATCATGATGCGGTTGACACGAGCTGATAAAGAACCAGAATATGAAATGGATGGATGCGTTGTTTGCAGGGAAAATGATTTCGGTGTTGATAAGTTATTCAACAAATATTTCTGA 564 0.4238 MEHWFSHEFCDSFQLMVHDLAYYVKGQRLLGGYKQGSGIVCSCCDIEINPSQFEAHAGMAARRQPYRRIYTSNGLTLHDIALSLANGQNLTMGDSDDMCVICGDGGDLIPCNGCPRAFHAACFDSPTVPASDWHCLNCKDNTDDEGGVRPIMMRLTRADKEPEYEMDGCVVCRENDFGVDKLFNKYF* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1327 187 ProSiteProfiles Zinc finger PHD-type profile. 96 141 IPR019787 -
Psa3g1327 187 SUPERFAMILY FYVE/PHD zinc finger 83 139 IPR011011 -
Psa3g1327 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 146 IPR013083 -
Psa3g1327 187 Pfam PHD-finger 98 140 IPR019787 -
Psa3g1327 187 Pfam Tify domain binding domain 32 81 IPR032308 -
Psa3g1327 187 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 19 182 - -
Psa3g1327 187 SMART PHD_3 98 139 IPR001965 -
Psa3g1327 187 PANTHER AUTOIMMUNE REGULATOR 19 182 - -
Psa3g1327 187 ProSitePatterns Zinc finger PHD-type signature. 99 138 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1327 Psa-Chr3 119118606 119119169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1327 19 182 PHD Transcription Factor Family AT3G53680 59.884 2.38e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa3g1327 TDBD 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1327 - - lja:Lj5g3v0614410.1 288.115