Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1322 ATGGATCATGTGATTGCTGGGAAGTTTAAGCTTGGAAGGAAAATTGGAAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGTGAGGAGGTAGCTGTCAAGCTGGAGCCCGTGAAGACCAAGCATCCGCAGCTTCACTATGAATCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGGTGCCTCACCTGAAGTGGTTTGGAGTTGAGGGAGACTACAATGTGATGGCGATCGACCTTCTTGGACCTAGTCTGGAAGATCTGTTCAATTATTGTAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAATAGGGTTGAATATATGCATTCAATAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAATCAGGTCTACATCATTGACTATGGCCTCGCCAAAAAATTAGAGATCTTCAGACTCATAAGCACATACCATACAGTTACGAAAAAGCTCTTTTTCTTGTGCAGAGAAAACAAGAACTTACAGGCACAGCTCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTACGTTCTCATGTACTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCGGGTACCAAAAAACAAAAATATGATAGGATCAGTGAGAAGAAGATGACAACTTCCATAGAGGTGCTTTGCAAATCATATCCCTCAGAGTTCGGATCATACTTCCACTACTGCCGATCTTTGCGGTTTGAAGACAAGCCTGACTACTCCTATTTAAAGAGGCTTTTTCGAGATCTATTTATTCGAGAAGGCTATCAATTTGACTATATTTTTGATTGGACTATATTGAAGTATCCGCAGATCAGTGGAAGCTCTCGAGGGAGGCATGACAGTGGCAAGGCGGCTATGAATGCAGGGCCATCCATACAGAGGCCAGAAAAGACCTCAGTCGGGAAAGAGCTTCGAGAGAGATTCTCTGGGGCTGTTGAAGCATTCTCGCGGAGGAACCCAACAAGTTCTAGTCCTCGCCGCGATCATTCTAAACATAGGGGTTTTGAAGATGTAGCAGCGATGCCCAAGGATGCGCATCATGATCAAGAAAAGGGACGCAATTCTGGCCGATACGGCAGCAGTTCAAGAAGACCTATAATCTCATCAACATCCAAGCCAAGTTCATCTGGTGATCATACTGACAGTCGTACTGGCCGTCTGACCTCATCTGGTAGCCGTCCATCAACCGCACATAGAGTGCAACCTATGTACGAGACCAAACAACCAACCTACACACGACCAGGATCTACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAACTCCTCTCTATCAGGAAGTAA 1383 0.4469 MDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSIGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKLEIFRLISTYHTVTKKLFFLCRENKNLQAQLEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMTTSIEVLCKSYPSEFGSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYIFDWTILKYPQISGSSRGRHDSGKAAMNAGPSIQRPEKTSVGKELRERFSGAVEAFSRRNPTSSSPRRDHSKHRGFEDVAAMPKDAHHDQEKGRNSGRYGSSSRRPIISSTSKPSSSGDHTDSRTGRLTSSGSRPSTAHRVQPMYETKQPTYTRPGSTRGNRDDPLRSFELLSIRK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1322 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa3g1322 460 PANTHER CASEIN KINASE-RELATED 1 448 - -
Psa3g1322 460 MobiDBLite consensus disorder prediction 299 460 - -
Psa3g1322 460 Pfam Protein kinase domain 10 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1322 460 Coils Coil 172 192 - -
Psa3g1322 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Psa3g1322 460 SUPERFAMILY Protein kinase-like (PK-like) 4 288 IPR011009 -
Psa3g1322 460 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Psa3g1322 460 MobiDBLite consensus disorder prediction 347 379 - -
Psa3g1322 460 SMART serkin_6 9 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1322 460 MobiDBLite consensus disorder prediction 444 460 - -
Psa3g1322 460 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 448 - -
Psa3g1322 460 MobiDBLite consensus disorder prediction 323 337 - -
Psa3g1322 460 MobiDBLite consensus disorder prediction 380 442 - -
Psa3g1322 460 ProSiteProfiles Protein kinase domain profile. 9 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1322 Psa-Chr3 118965968 118973826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1322 2 211 Miscellaneous Gene Families AT1G29230 26.047 1.41e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa3g1322 Pkinase 3.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1322 K08960 - cam:101493293 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1322 3 118965968 118973826 Psa3g1322 3 118965968 118973826 ECH
Psa3g1322 3 118965968 118973826 Psa6g1444 6 69927010 69931246 PCT