Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1310 ATGGGGAGTAGGGTTAGACATTCGAGGAAGAGATTGTTGAAGATAATGAAGTGTCTTTGCTCAGGGGAGGTTGTAAAAGAAGAAGATACAATCGTTCCTAGTTTGTCGGAATCTCTTGCAACCAAGGATTATTATTCGGCGACTCCGAGTGGGATTTCTGGCCAAGATGGACAAGTTGAGAGGAGGCCGGATTTTGGTAACATAGAACAAGCTGAATCGTCTTTGCGTGAGAGTGGTGGTATATTGAATTATGAGGAAGCTAGAGCTTTGTTAGGGAGATATGAATATCAGGAAGGAAACATAGAAGCTGCTTTGCATGTTTTTGGAGGCATAAACATAGCTGCTGTGACTCCCAAGATAAACAATTTCCTTGCCAGAAGTAGAGAGCACCCCAAGAGACGCTCTCGGGATCACACTACTCCATCAATATCTATACACACAGCTGGATTACTATTAGAAGCAATCTTTCTAAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTCAAGAATCTGCCCACACATGCAAATTTATTGTTGACATGATTGAGTCTTCTTTACCTGAAGGCCTGCCTAGAAACTTTGGAGCCGAATGTAAATTGCAGGAGACTTTAAGTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGAGTGTCCACGTGAAGTTATTTTGTCTTACCGGCGTGCACTCCTTCATCAATGGAATCTTGATGCAGAGACCACAGCAAAAATTCAGAAAGAATTTGCCATTTTTCTTCTATATAGTGGAGGGGAAGAAATTCTCCCAGATCTTCGTTCCCATATCGACAGTTCATTTGTACCAAGTAATAACACTGAAGAGGCTATACTTCTTTTAATGATTTTGCTTAGAACAACATCTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGAGCACCTTTCATTTGCTCTATCGGTTTCCGGGAATCTGACAGCTTTAGCCAATCAATGGGAAAAATTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTTTGGGGCAGATAAGGACTTGGTGGCCTTTAATCTTCTTAAAAAGTTGTTGAGTAACGGAGAGGATCCAAAACATGTTCCTGCTTTGTTAATGGCTTCTAAGATATGCTGTGAGAACCCTGACCTGGCAAAAGATGGGGTTAGCTATGCTAGCAGAGTTCGTGAGAACTTGGGTGAAAGATGTAATCAGTTGGAAAGTCTCGCTAATTGCTTACTCGGTGTTTCACTTTCAACATACTCAAAATTAGCTGTTTCTAATTCTGAGATGTTTGAGAGACAATCTGAGGCTCTCCATTCATTAGAAATCGCAAGCACTATGACCAGAATGAATGACCCTCTTGTACTTTACTATTTAAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATTCTGCACTTCTTTATGCAAAGCGCTCTCTAGACTTAGAAACCGGGTCTAATATTAAAGGCTGGTTGTTGCTAGCCCGAATATTATCAGCACAAAAACAGTTTTTGGGTGCTGAATCTATTGTTGATGCTGCTTTGGATCGGACTGGAACGTGGGATCAAGGATTTCTGTTGCGAACCAAAGCTAAACTGCAAATTGCACAGGGGAAGTTGCCAAGTGCCATTGAAACATATATTCAGCTTCTTGCTATTCTTCTGGTTCAGAGAAAAACTTTTGGTTCAAGAAACAAGCTATACAAGATCTATTAA 1734 0.406 MGSRVRHSRKRLLKIMKCLCSGEVVKEEDTIVPSLSESLATKDYYSATPSGISGQDGQVERRPDFGNIEQAESSLRESGGILNYEEARALLGRYEYQEGNIEAALHVFGGINIAAVTPKINNFLARSREHPKRRSRDHTTPSISIHTAGLLLEAIFLKAKCLQVLGRFQESAHTCKFIVDMIESSLPEGLPRNFGAECKLQETLSKAVELLPELWKLAECPREVILSYRRALLHQWNLDAETTAKIQKEFAIFLLYSGGEEILPDLRSHIDSSFVPSNNTEEAILLLMILLRTTSLNKIEWDPSILEHLSFALSVSGNLTALANQWEKLLPGTINRRERYHALALCYFGADKDLVAFNLLKKLLSNGEDPKHVPALLMASKICCENPDLAKDGVSYASRVRENLGERCNQLESLANCLLGVSLSTYSKLAVSNSEMFERQSEALHSLEIASTMTRMNDPLVLYYLSLECAEQRKLDSALLYAKRSLDLETGSNIKGWLLLARILSAQKQFLGAESIVDAALDRTGTWDQGFLLRTKAKLQIAQGKLPSAIETYIQLLAILLVQRKTFGSRNKLYKIY* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1310 577 Gene3D Tetratricopeptide repeat domain 59 577 IPR011990 GO:0005515
Psa3g1310 577 PANTHER PROTEIN NPG1 8 576 IPR043376 -
Psa3g1310 577 SUPERFAMILY TPR-like 456 559 IPR011990 GO:0005515
Psa3g1310 577 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 8 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1310 Psa-Chr3 118033772 118039367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1310 5 577 Calmodulin-binding Proteins AT4G28600 55.155 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1310 K21843 - gmx:100809498 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1310 3 118033772 118039367 Psa3g1310 3 118033772 118039367 ECH
Psa6g1432 6 69494057 69497669 Psa3g1310 3 118033772 118039367 PCT