Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1304 ATGGAGGATTCTGGAAAATCCATCAACAACATCGCGAGTAAAAGTAGTAGTAAACTATTGAATCCATGGATGCTTCACTTTCAGAAACTCGCTCTCGAACTCAAATGCCCTCTCTGCTTGAGCTTGTTCAAGCAACCGGTTTTGCTTCCTTGCAACCACTTGTTCTGCAGTTCCTGCATGTCAGATAGTTCAACGATTGATTCTGAGTGTGCTCTCTGTAACACCAAATACGCTCAAATAGATTTAAGGCATGTGCCATTTGTGGAAAACATGGTGACTATTTATAAGAACTTGGATGCGACCTTTTGTGCTAATGTATTTCAGCAACGTTCTTTTGATGATAGGATGGTTTTGGAGCGTTGCCAAACTCTTAACAATTCAACTTGTAGTAATAAGAATACCGACAAGGTTCTGCTGAACTCGAGTATGTCAAATGAGGCTGGGGATGCTAACCGCATTGTGGAGAAAAGTAATTCAATGAGATGTTCTCAGAAAGAAATTGGGGATCGTGTTGAAATGGATTTGAATCAAGTGACTGAATCAGCACCAGACAGCCCTCCATTTTGTGATACCAAAGGTTCTGATAACTGCTGTAGTTATCAAGACAGTGAGCAGCCAGTCAATGTTGTGAAATCTGAATATTCATCATTAAAAAGTGCAACTACAGGAAAAAGTGATTTGAAAGAAAGAATGGCAAAGTTCAGGTCTGAAAGTTCTGCCTCTGAAAATGAGGGTCTTGTGCGAGGTATTAAGAAACAAAAAAATCTTACTAATGGAGATGCTATTATTCAACAAAGCACCTCATATCATAATAAGCTTGTGGATTACCGCCATGACTTGGACCTTAAATCTGAAAAGGACCCTGGTCTAATCATACCTTCTAATGCACCAAATGACTTGTGTCCAAGTACAAGCATGTGCTCGTTTTGCCAGTCCTTTAATATTTCAGAGGCTACTGGGCCTATGCTCCATTATGAAGAAGGAATTTTAGTTACAGGAGATGCTGCAATGCAACCAAATGTTGTGCATGTGCATAAAGTTTGTATTGACTGGGCTCCCCAAGTGTACTTTGTTGGTGAAACTGTTAAGAATTTGAAGAAAGAAGTGGCCAGGGGAGCAAAGCTTAAATGCACCCAATGCGGTCTAAAGGGAGCTGCTCTTGGTTGCTTTGTCAATCATGTGGATTATCTCTTGCTATGCCCCTCTCATTCAAATGTCAAATTTCCAAGTGAGAACTCCAGTCATAAGAAAAAGTCAACTCAGAAGCATTCTGTTTCATCTCAACTGCCATTTCAACAACCAAACAACCTGTTGGGAGGTTTAAAGAATAGTGGTAAAAAAATGGTTTTTTGTGGATCTGCCCTATCAAATGAAGAAAAGGTGCTTTTGATTAATTTTGCAAGCAAGGTTGGTGCTACAGTGACCAAGTGTTGGACCTCAAATGTCACCCATGTGATTGCAGCAACGGATGCAAATGGGGCATGCTCGAGGACAATGAAAGTTTTGAGGGCAATTCTAAATGGACAATGGATCCTAAAAGTAGACTGGATAATTGCATGCTTGGAAGAGACTAATCTTGTTGACGAAGAATGTTATGAAATTGATCTAGACAATCAAGGGTGCCGTGGTGGCCCAAAAGCTGGCAGACTTATGGCACTGGCCAAGGAGCCAAAGATATTCAGTGGCTTAAAGTTTTATTTTTCTGGTGACTATGATTTGAGTTTTAAGAAATATCTTGAAGATTTAGTTGAAGCGGGAGAAGGTGCTGTGTTGAAAAGCAAAGATGAATTGGAACTTAGAGTAGATGCAAAAGTGCTGGTTGTTTACAATATTGATCCTCCACAAGGATGTAAGCTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGACTAAGTGAAGCAGAGGATCTAGCTGCCAATACCGGTTATCAAGTTATTGGTCACACTTGGATTCTGGAGTCAATTGCTGCATGTAAACTGCAGCCTTTGGTTAGTTAA 1995 0.404 MEDSGKSINNIASKSSSKLLNPWMLHFQKLALELKCPLCLSLFKQPVLLPCNHLFCSSCMSDSSTIDSECALCNTKYAQIDLRHVPFVENMVTIYKNLDATFCANVFQQRSFDDRMVLERCQTLNNSTCSNKNTDKVLLNSSMSNEAGDANRIVEKSNSMRCSQKEIGDRVEMDLNQVTESAPDSPPFCDTKGSDNCCSYQDSEQPVNVVKSEYSSLKSATTGKSDLKERMAKFRSESSASENEGLVRGIKKQKNLTNGDAIIQQSTSYHNKLVDYRHDLDLKSEKDPGLIIPSNAPNDLCPSTSMCSFCQSFNISEATGPMLHYEEGILVTGDAAMQPNVVHVHKVCIDWAPQVYFVGETVKNLKKEVARGAKLKCTQCGLKGAALGCFVNHVDYLLLCPSHSNVKFPSENSSHKKKSTQKHSVSSQLPFQQPNNLLGGLKNSGKKMVFCGSALSNEEKVLLINFASKVGATVTKCWTSNVTHVIAATDANGACSRTMKVLRAILNGQWILKVDWIIACLEETNLVDEECYEIDLDNQGCRGGPKAGRLMALAKEPKIFSGLKFYFSGDYDLSFKKYLEDLVEAGEGAVLKSKDELELRVDAKVLVVYNIDPPQGCKLGEEVSILWQRLSEAEDLAANTGYQVIGHTWILESIAACKLQPLVS* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1304 664 Pfam BRCT domain, a BRCA1 C-terminus domain 557 662 IPR001357 -
Psa3g1304 664 Pfam BRCA1 C Terminus (BRCT) domain 445 521 IPR001357 -
Psa3g1304 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 107 IPR013083 -
Psa3g1304 664 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Psa3g1304 664 ProSiteProfiles BRCT domain profile. 444 534 IPR001357 -
Psa3g1304 664 CDD BRCT_Bard1_rpt1 449 527 - -
Psa3g1304 664 SUPERFAMILY BRCT domain 559 661 IPR036420 -
Psa3g1304 664 SUPERFAMILY RING/U-box 28 95 - -
Psa3g1304 664 SUPERFAMILY BRCT domain 448 535 IPR036420 -
Psa3g1304 664 Pfam Zinc finger, C3HC4 type (RING finger) 33 78 - -
Psa3g1304 664 Gene3D BRCT domain 557 657 IPR036420 -
Psa3g1304 664 ProSiteProfiles BRCT domain profile. 555 664 IPR001357 -
Psa3g1304 664 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 17 662 IPR031099 GO:0006281|GO:0006974
Psa3g1304 664 Coils Coil 224 244 - -
Psa3g1304 664 Gene3D BRCT domain 444 550 IPR036420 -
Psa3g1304 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 425 IPR013083 -
Psa3g1304 664 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 17 662 - -
Psa3g1304 664 SMART BRCT_7 557 657 IPR001357 -
Psa3g1304 664 SMART BRCT_7 434 524 IPR001357 -
Psa3g1304 664 SMART ring_2 36 73 IPR001841 -
Psa3g1304 664 ProSiteProfiles Extended PHD (ePHD) domain profile. 304 424 IPR034732 -
Psa3g1304 664 ProSiteProfiles Zinc finger RING-type profile. 36 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1304 Psa-Chr3 117638364 117643908 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1304 478 591 Core DNA Replication Machinery Family AT4G02110 30.252 6.51e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1304 K10683 - gmx:100784883 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1304 3 117638364 117643908 Psa3g1304 3 117638364 117643908 ECH