Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1295 ATGGCACCACCCAATCCGAAAGTTAAAGCGGCTTTCCGCGCAATGACGAACCTTGGCATTCATGAATCCAAAGTGAAACCAGTGTTAAAGAAACTGATTAAATTGTATGAAGGAAACTGGGAGCTTATTGAAGCAGATAATTATACTGCTCTTGTAGATGCTATTTTCGATGTGGAAGATAATCAACAGGAAGATAATCAGGAAGGGGGGGTTGAGGTTGAAGCTCCTGCGCCCGTACAGGAAGTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGACAGTCAATTTTCACGCCTTCCGACTAGTGGCGGTAGCCCAAGTTCAGCCGTCTCTCCAGTGAAAACACACCTTCCGACTAGTGGTTCAGCCGTCTCTCCAGTGAAAACACACCTTCCGACTAGTGGCGGTAGCCCAAGTTCACCCGCCCCCAAGTTCACCCGCCGTCTCTCCGAGTTGAAATCACGCCCTCAGACTAGTGGCGGTAGCCCAACTTCACCCGCCGTCTCTCCAGTGAAATCACGCCCTCAGACTAGTGGCGGTAGCCCAAGTTCACCTGCCTCCTCTCCATTGAAATCACCTAAACCAAGACCCGGTACAGTACCTGAAAATGGTTCCGAACTGCAGCCTCAAAGCCCATCAGTGTTATCCAGAAGAAATGCTGTTGTTGACAAGGGAAAGAAGCCTATCTCACCTCTAGATACTTCAAGACGGAGAAAATCTATATCTGACAGAAGTCCATCTAAAGAACAGACAGTTGAACCAGGAACCTCTCCATCGCCAAAAATCAAAACGCCCCATCCTTACCCTTTTATCATCCCCAAGGAAGAGCCTGTTAGTGATGAGGCAGATTATGAGGTTCCCATTTCAATGGTTTTTCCTGAACCTTTAAGTGCCGAAGAGCAAGATGACAACAACGCAGTGGCATCACAATGCAGGAACAGAAATGTTGAAGATGAAGCCTTGGTTGCATCTCAAGTTCATGTTTTTGTACGCTCCACATGTAACCCAGATGACATAACAAAGGGAGAAGAAAAAGTGAAAATTCCATGGGTGAATAATTCTACTAATGATATCCCGCCTTTGTTTCACTACATGCCCCAAAACACGGTGTTCCAAGATGCATATCTTAATATTTCTCTATCGCGTATTGGGAACAAAGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCTTGTGCAAATAAAACTGGAGGAGATTTTGCCTATACTGCACAAGGTGTAGTAAAGGAAGAGTTCTTGGAAGAGTGTATTGCCAACAGCCGCACTCAAAGTTTTACCTATTGCAAGGAATGCCCACTTGAAACATCAAAGAATGATGGCTGTTTAGAACCATGTAAAGGACATTTGAAGAGGAAATTTATTAAAGAATGCTGGAGCAAATGTGGCTGTGGGAATCATTGTGGCAATCGGATTGTCCAGCGTGGAATAACTTGCAACTTGCAGGTGTTTTTAACTTCAGATGGAAAAGGATGGGGTCTTCGCACCTTAGAGGAACTTCCAAAAGGTGCATTTGTATGCGAGTTTGTTGGAGAAATTCTGACAGTCAAAGAGCTGCATGAGAGGAACAAAGCTAGAAAATATACTTTACCAATTTTATTGGATGCAGAATGGGGCTCAGGAGTTGTAAAGGATAACCAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCTGCTCGGTTTATTAATCACAGATGTTTGGATGCAAATTTGATTGAGATCCCGGTTGAAGTTGAGAGTCCATCTCATCACTATTATCATATTGCCTTCTTCACATCCAGAAAAATTGAAGCACAGGAAGAGTTGACCTGGGATTACGGCATTGACTTTGATGAAGATGATCAATCACTCGAGCTCTTTAAATGCAAATGTGGCAGTAGATTCTGCAGGAATATTAAGCGGACAAATAGAATGGTTAGATCGTTCACTGCTGCGTGA 1980 0.4379 MAPPNPKVKAAFRAMTNLGIHESKVKPVLKKLIKLYEGNWELIEADNYTALVDAIFDVEDNQQEDNQEGGVEVEAPAPVQEVRPLKRLRLRGQDSQFSRLPTSGGSPSSAVSPVKTHLPTSGSAVSPVKTHLPTSGGSPSSPAPKFTRRLSELKSRPQTSGGSPTSPAVSPVKSRPQTSGGSPSSPASSPLKSPKPRPGTVPENGSELQPQSPSVLSRRNAVVDKGKKPISPLDTSRRRKSISDRSPSKEQTVEPGTSPSPKIKTPHPYPFIIPKEEPVSDEADYEVPISMVFPEPLSAEEQDDNNAVASQCRNRNVEDEALVASQVHVFVRSTCNPDDITKGEEKVKIPWVNNSTNDIPPLFHYMPQNTVFQDAYLNISLSRIGNKDCCSTCMGNCVLSSKPCSCANKTGGDFAYTAQGVVKEEFLEECIANSRTQSFTYCKECPLETSKNDGCLEPCKGHLKRKFIKECWSKCGCGNHCGNRIVQRGITCNLQVFLTSDGKGWGLRTLEELPKGAFVCEFVGEILTVKELHERNKARKYTLPILLDAEWGSGVVKDNQALCLYAASYGNAARFINHRCLDANLIEIPVEVESPSHHYYHIAFFTSRKIEAQEELTWDYGIDFDEDDQSLELFKCKCGSRFCRNIKRTNRMVRSFTAA* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1295 659 MobiDBLite consensus disorder prediction 221 247 - -
Psa3g1295 659 Pfam Ubiquitin-binding WIYLD domain 7 61 IPR018848 GO:0018024
Psa3g1295 659 ProSiteProfiles Pre-SET domain profile. 389 489 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g1295 659 ProSiteProfiles SET domain profile. 492 621 IPR001214 GO:0005515
Psa3g1295 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 331 656 - -
Psa3g1295 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 175 325 - -
Psa3g1295 659 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 4 171 - -
Psa3g1295 659 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 658 IPR025776 -
Psa3g1295 659 SUPERFAMILY SET domain 347 644 IPR046341 -
Psa3g1295 659 Pfam SET domain 504 621 IPR001214 GO:0005515
Psa3g1295 659 MobiDBLite consensus disorder prediction 95 145 - -
Psa3g1295 659 CDD SET_SETDB-like 361 621 - -
Psa3g1295 659 Gene3D SET domain 319 632 IPR046341 -
Psa3g1295 659 Pfam Pre-SET motif 340 484 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g1295 659 Gene3D - 1 61 IPR043017 -
Psa3g1295 659 MobiDBLite consensus disorder prediction 153 188 - -
Psa3g1295 659 MobiDBLite consensus disorder prediction 204 218 - -
Psa3g1295 659 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 175 325 - -
Psa3g1295 659 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 4 171 - -
Psa3g1295 659 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 331 656 - -
Psa3g1295 659 SMART preset_2 337 476 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa3g1295 659 SMART set_7 492 627 IPR001214 GO:0005515
Psa3g1295 659 MobiDBLite consensus disorder prediction 62 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1295 Psa-Chr3 117291432 117296669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1295 339 644 Su(var)3-9 homologs AT1G73100 28.746 7.92e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa3g1295 Pre-SET 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1295 - - cam:101500192 693.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1295 3 117291432 117296669 Psa3g1295 3 117291432 117296669 ECH
Psa6g3291 6 284296241 284312686 Psa3g1295 3 117291432 117296669 PCT