Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1288 ATGTCGGGAAAGATAGTTATCCCAGTTGTTTCTCTTATCCTCGTCGTAGGAGTTGCCATCGGCGTTGTTGTCGTTGTTCACAAAAATGGTGAAGATCCTGAGATGAAAACTCAACAAAGATCTGTTCAAATCATTTGTCAAAATGCAGAAGATAAAGATCTTTGCCAGGACACTCTTAAATCTGTTAATGGCGTCGAATCCGCAGATCCAAAGGCATACATAGCAGCGGCCGTGAAAGCCACCACGGACAGTGTCATTAAGGCTTTCAACATGAGTGACAGACTCTCCACGGAATACGGTAGCCAAGATGGTGGCATCAAGATGGCTCTTGATGACTGCAAAGATTTGTTGCAGTTTGCTATGGACAGTCTCGAAATGTCCACCAATTTGGTTCGTGACAACAACATCCAAGCTGTGCATTCCCAAACTCCTGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACCAACAAAGTTGCATGGAAGGATTTGATGATGAAAAAGATGGTGAGAAAAAGATCAAGGATCAATTTCATGTAGAGTCTTTGGATGGTGTACAAAAGATCACCAGTGTTGCACTTGATATCATGAGTGGTTTGTCAAACATCCTTCAACAATTCAACTTGAAGCTTGATCTTCAGCCTGCTTCTCGTCGTCTTCTTGCTGAGGATATTGACAATGAAGGATTCCCTACATGGTTCTCTGGTTCTGATCGTAAGCTTTTGGCTTCAATGCAAGGAAAAGGATGGAGATCAAAGGTTGTCCCTAATATGCAATTCCGGCCACAAATACTCGAGTACATCACCGTCCCTAAGACTGCCGCTAACATTCTTATGTATGGTGATGGCCCTCAAAGGACTATTGTCACCGGTAAAAAGTGCTTTGCTAATGGTGTCAAGACCATGCTAACCGCCACCTTCGCCAACACTGCTCCTGGATTCATCGGAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCATCAAGCCGTTGCTTTGAGAAACCAAGGAGATATGTCTGCTTTCGTCGGTTGTCATATCCTTGGTTATCAAGACACATTCACAGTTACCGCTGACGGAACAGCCGAGAAGAATGGCCACAGGTATCGTGATCCAGGATTGCCAGATCGTTCCAGAATCACAATTGTTAGTGAGATTCCAAGTAAAACTTTACTGGGAAGACCATGGAAGGCATACTCAAGAACAGTTGTGATGGAATCCACATTGGTGACTTCATTCATCCAGATGGTTGGTTCCCATGGCACAGGTTCCAACTTCGAAACACACTTTACTATGCTGAAATGCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCGTGGTATCATTAGCAGGGCTGAGGCTAACCAATTCACTGCTGCTGAATTTCTTAAGGCTGGACCTCAGTCTGGAGCTGAGTGTTTGAAGGCTTATTCGTGTTCCTCACTATCTTGGCTCAAAGCTTGA 1491 0.446 MSGKIVIPVVSLILVVGVAIGVVVVVHKNGEDPEMKTQQRSVQIICQNAEDKDLCQDTLKSVNGVESADPKAYIAAAVKATTDSVIKAFNMSDRLSTEYGSQDGGIKMALDDCKDLLQFAMDSLEMSTNLVRDNNIQAVHSQTPDLRNWLSAVISYQQSCMEGFDDEKDGEKKIKDQFHVESLDGVQKITSVALDIMSGLSNILQQFNLKLDLQPASRRLLAEDIDNEGFPTWFSGSDRKLLASMQGKGWRSKVVPNMQFRPQILEYITVPKTAANILMYGDGPQRTIVTGKKCFANGVKTMLTATFANTAPGFIGKAMTFENTAGPDGHQAVALRNQGDMSAFVGCHILGYQDTFTVTADGTAEKNGHRYRDPGLPDRSRITIVSEIPSKTLLGRPWKAYSRTVVMESTLVTSFIQMVGSHGTGSNFETHFTMLKCNTGPGADVSKRIKWKGYRGIISRAEANQFTAAEFLKAGPQSGAECLKAYSCSSLSWLKA* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1288 496 SUPERFAMILY Pectin lyase-like 266 473 IPR011050 -
Psa3g1288 496 Gene3D - 261 374 IPR012334 -
Psa3g1288 496 Gene3D - 376 482 IPR012334 -
Psa3g1288 496 PANTHER PECTINESTERASE 357 485 - -
Psa3g1288 496 PANTHER PECTINESTERASE 266 362 - -
Psa3g1288 496 PANTHER PECTINESTERASE 3 246 - -
Psa3g1288 496 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 198 IPR006501 GO:0004857
Psa3g1288 496 PANTHER PECTINESTERASE 357 485 - -
Psa3g1288 496 PANTHER PECTINESTERASE 266 362 - -
Psa3g1288 496 PANTHER PECTINESTERASE 3 246 - -
Psa3g1288 496 CDD PMEI-like_3 45 202 - -
Psa3g1288 496 Pfam Plant invertase/pectin methylesterase inhibitor 41 196 IPR006501 GO:0004857
Psa3g1288 496 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 201 IPR035513 -
Psa3g1288 496 SMART PMEI_2 37 196 IPR006501 GO:0004857
Psa3g1288 496 Pfam Pectinesterase 266 358 IPR000070 GO:0030599|GO:0042545
Psa3g1288 496 Pfam Pectinesterase 389 473 IPR000070 GO:0030599|GO:0042545
Psa3g1288 496 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 200 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1288 Psa-Chr3 116970243 116972047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1288 1 476 Carbohydrate Esterase AT2G47030 30.616 3.84e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1288 K01051 - gmx:100781507 531.561