Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1287 ATGAGTGACAGACTCTCCACGGAATACGGTAGCGGTGGCATCAAGATGGCTCTTGATGACTGCAAAGATTTGTTGCAGTTTGCTATGGACAGTCTCGAAATGTCCACCAATTTGGTTCGTGACAACAACATCCAAGCTGTGCATTCCCAAACTCCCGATCTCAGGAATTGGTTGAGTGCAGTTATCTCTTACCAACAAAGTTGCATGGAAGGATTTGATGATGAAAAAGATGGTGAGAAAAAGATCAAGGATCAATTTCATGTAGAGTCTTTGGACGGCATACAAAAGATCACTAGTGTTGCACTTGATATTGTCAGTGGTTTGTCCAACATCCTTCAACAATTCAACTTGAAGCTTGATCTTCAGCCTGCTTCTCGTCGTCTTCTTGCTGAGGATATTGACAATGAAGGATTCCCTACATGGTTCTCTGGTTCTGATCGTAAGCTTTTGGCTTCAATGCAAGGAAAAGGATGGAGATCAAAGATTGTCCCTAATATGCAATTCCGGCCACAAATACTCGAGTACATCACCGTCCCTAAGACTGCCGCTAACATTCTTATGTATGGTGATGGCCCTCAAAGGACTATTGTCACCGGTAAAAAGTGCTTCGCTAATGGTGTCAAGACCATGCTAACCGCCACCTTCGCCAACACTGCTCCTGGATTCATCGGAAAGGCAATGACATTCGAGAACACAGCCGGTCCTGATGGTCATCAAGCCGTTGCTTTGAGAAACCAAGGAGATATGTCTGCTTTTGTCGGTTGCCATATCCTTGGTTATCAAGATACATTGTACGTTCAAACCAACAGACAATTCTACCGCAACTGTGTCATCTCTGGAACCATCGATTTCATCTTCGGAATATCACCAACCTTGATTCAACACTCCGTGATCATCGTCAGGAAGCCTAACATGAATCAATTCAGCACAGTTACCGCTGACGGAACAGCCGAGAAGAACATGGCCACAGGTATCGTGATCCAGGATTGCCAGATCGTTCCAGAATCACAATTGTTTCCAGTGAGATTCCAAATAAAATCTTACTTGGGAAGACCATGGAAGGCATACTCAAGAACAGTTGTGATGGAATCCACCATTGGTGACTTCATTCATCCAGATGGTTGGTTCCCATGGACAGGTTCCAACTTCGAAAACACACTTTACTATGCTGAATATGCCAACACTGGACCTGGTGCCGATGTTAGCAAGAGGATCAAGTGGAAGGGTTATCGTGGTATCATTAGCAGGGCTGAGGCTAACCAATTCACTGCTGCTGAATTTCTTAAGGCTGGACCTCAGTCTGGAGCTGAGTGGTTGAAGGCTATTCGTGTTCCTCACTATCTTGGCTTCAAAGCTTGA 1359 0.4481 MSDRLSTEYGSGGIKMALDDCKDLLQFAMDSLEMSTNLVRDNNIQAVHSQTPDLRNWLSAVISYQQSCMEGFDDEKDGEKKIKDQFHVESLDGIQKITSVALDIVSGLSNILQQFNLKLDLQPASRRLLAEDIDNEGFPTWFSGSDRKLLASMQGKGWRSKIVPNMQFRPQILEYITVPKTAANILMYGDGPQRTIVTGKKCFANGVKTMLTATFANTAPGFIGKAMTFENTAGPDGHQAVALRNQGDMSAFVGCHILGYQDTLYVQTNRQFYRNCVISGTIDFIFGISPTLIQHSVIIVRKPNMNQFSTVTADGTAEKNMATGIVIQDCQIVPESQLFPVRFQIKSYLGRPWKAYSRTVVMESTIGDFIHPDGWFPWTGSNFENTLYYAEYANTGPGADVSKRIKWKGYRGIISRAEANQFTAAEFLKAGPQSGAEWLKAIRVPHYLGFKA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1287 452 Pfam Pectinesterase 174 429 IPR000070 GO:0030599|GO:0042545
Psa3g1287 452 Gene3D - 169 450 IPR012334 -
Psa3g1287 452 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 7 108 IPR035513 -
Psa3g1287 452 ProSitePatterns Pectinesterase signature 2. 278 287 IPR033131 -
Psa3g1287 452 Pfam Plant invertase/pectin methylesterase inhibitor 13 104 IPR006501 GO:0004857
Psa3g1287 452 SUPERFAMILY Pectin lyase-like 174 443 IPR011050 -
Psa3g1287 452 PANTHER PECTINESTERASE 1 153 - -
Psa3g1287 452 PANTHER PECTINESTERASE 174 450 - -
Psa3g1287 452 CDD PMEI-like_3 15 110 - -
Psa3g1287 452 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 109 IPR035513 -
Psa3g1287 452 PANTHER PECTINESTERASE 174 450 - -
Psa3g1287 452 PANTHER PECTINESTERASE 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1287 Psa-Chr3 116953662 116955195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1287 15 450 Carbohydrate Esterase AT2G26450 39.224 3.75e-105 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1287 K01051 - gmx:100781507 659.448