Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1272 ATGACAAATCATCAAAAGGCTATTGCCTCTGTCTTTTATACACTACTTATATCTTTGCTTCCATTGAAAATCACAGCATCACTAACAACAGTAGCAGAAGCTCTGGCCAAATGGAGCCTATCACCATCTCTTCCTTCATGGTCACTCACCAACCATATCAACCTTTGCAATTGGGATGCTTTGGTTTGTGACATCTCAAATACAACTGTCTCAAAGATAAACTTGTCTAATGTCAATATCAGCGGAAAACTCGCTGACTTGGATTTTACTTCTCTTCCACACCTTACCCTCCTAAACCTCAATGGAAATAGGTTTGGTGGATCAATACCATCAACAATTGACAACCTCTCCAAACTCAGTTTCTTGGACTTGGGAGACAACTTACTTGAAGGCACACTCCCTTCTGAGCTAGGCCAGCTAAGGGAACTTCAACATGTTAGTTTTTTCAACAATAGTCTCAATGGTACCATTCCCTATCAATTCACTAATCTCCCCAAGAACAAATGGAATGGTACAATACCAGAATCCATGTATGGTAATTTGGGCAAACTTGAGTATCTCGACCTCACAAACGGTTCTCTAGAAGGAAAACTGTCATCCAACTTGTCCATGCTCTCAAATCTCAAACATCTTCGTCTAGGTAATAACATGTTTAATAGTCCTATTCCAGCAGAGATAGGATCGATATCTAGGCTTCAAATTCTTGAACTGAACAGCATTTCAGCCCATGGGGAAATTCCTTCTTCCATAGGACAACTAAAAGAGCTAGTGCATCTTGATCTCCGTCTTAATTTTTTAAACTCTAAAGTCCCTTCTGAGATTGGCCTATGCACAAATCTAACTTCCTTGAGCTTAGCAGAAAATAATCTAACAGGTTCTTTGCCTTTGTCATTAGCAAATCTGACCAAACTTTCAGAACTAGGATTATCAGATAATTTCTTTTCTGGTCAAATTTCTGCTTCATTGATCTCTAACTGGACTGAGTTAACTTCCTTGCAAGTTCAAAACAATAGTTTAATAGGAAAGCTTCCTCCACAGATTGGCCTTTTGAAGAAAATTAATTACCTTTATATGTACAAAAATCTTTTCTCTGGTCCTATTCCTGAAGAGATTGGAAACTTAAAGGAAATGACAGAGTTAGACCTTTCAGATAACCATTTCTCTGGTCCAATTCCACGAACCATATGGAACCTCACAAACATAACACTCATAAAACTTTTCTTCAACAACCTCTCTGGAAATATTCCGGAGGATATTGGAAACTTGACCTCACTGCAAGTTTTTGATGTCGACAATAACAACTTGGATGGAGAATTGCCACACACAATTGCTCATCTAACTTCCTTAACTGATTTTTCTGTGTTCTCAGGAGAACTTCCTTCTGACATGTGTAGCGGTCTCAATCTAGTAACTTTGTCGGTAAATAACAACAGCTTTTCAGGGCCGTTGCTGAACTCTTTGAAAAATTGTTCATCTCTTGTAAGAGTTAGGCTTGATGACAACAAGTTCAATGGGAACATCACAGAAGCTTTTGGGATTCATCCAAATCTTACTTTCATCAGACTTAGCAGAAATCATCTCGTTGGTTATCTATCTCCAGATTGGGGTAAATGTATCAACTTAACTGAGATGGAAATGAGTGGAAACAAATTTTCTGGAAAAATTCCATCTGAGCTAAGTAAGTTGAGTAAATTAAAAATTCTTAGCCTGCACTCCAACGAATTCACCGGAAATATCCCCTCTGAAATTGGAGATCTAAGTCTGCTCTTAAACTTCAATTTGAGCAGGAATCATTTGTCCGGAGATATCCCAGAGAGTATTGGAAGATTAGCTTGGCTTAATAATGTTGATTTATCAAATAATAACTTTAGGGGAAGCATTCCTAAAGAGATTGGTAACTGTAACCGGTTACTAAGCATGAATTTAAGCCACAACAATCTATCTGGTGTGATACCGTATGAACTAGGCAATCTGTTCTCACTCCAATCCATGTTAGATATCAGCAGCAACAACCTTTCAGGAGAAATTCCTCAAAATCTTCAAAAGTTAGCATCATTGGAGTTTCTCAATGTATCACACAATAATCTATCTGGAACAATCCCACAATCCTTTTCAAGTATGGTCAGCCTTCAATCTGTGGACTTTTCTTACAACCATTTGTCCGGTTCGATACCAACTGGTGCTGTTTTCCAGAATCAAAGTGCTGAAGCTTTTGTTGGGAATTCAGGTTTGTGTGGTGAGGTAAAGGGATTAGAATGCCCAAAAGTATTGTCCCAAGACAATTCTGGAGGGGCCAACAAAAAGGTACTTGTTGGTGTTACTATATCAGTTGGTGGAGTATTGTTTATAGGGATGATTGGTATTGGAATCCTGCTATTTCAAAGGAAAGCAAAAAAACAAAGTGAAGAATCCAAAAGCATTGAAGATGATGATCAATCTAATTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTAATCTTGTGAACGCAACCAATGACTTCAATGAAAAGTATTGCATTGGAAAAGGAGGATTTGGAAGTGTTTATAGAGCAGAACTACCTACAGGTCAAGTTGTTGCTGTGAAAAGACTCAATATATCAGATTCTGATGACATCCCAAAAGAGAACCGCATGAGCTTCATGAATGAGATAAAAACACTTACAGAAGTGAGGCACAGGAATATTATAAAGCTTTATGGCTTTTGTTCTAGGAGGGGAGAAATGTTCTTGGTTTATGAACATGTAGCGAGAGGAAGTTTGGGGAAAATGTTGTATGGAAAAGAAGGAAAAGTGGAGCTAAATTGGGGTACAAGGATGGAAATTGTGCAAGGATTAGCACATGCGATTGCTTACCTACATAGTGATTGTTCTCCACCAATCGTGCACAGAGATATAACGCTGAATAATATACTACTGGATTCAGATTTTGTACCTCATCTTGCAGATTTTGGCACTGCAAAGCTGTTAAGCTCTAACAACTCAACCTGGACTTCAGTTGCAGGAACCTATGGCTACATGGCTCCAGAGCTAGCACAAACCATGAGGGTGACTGAAAAGTGTGACGTGTATAGTTTTGGCGTTGTAGTGTTAGAGATATTGATGGGAACACACCCAGGAGAATTCTTGGATATCCTATATTCAAACAAGTCTCTGGCATTAATGGAAGTGCTTGTGAAGGATGTTGTAGACCAGCGGCTTCCACCTCCTACAGACGAAACAATAATGTTTACAATGAGAGTAGCTTTGGCATGCACATGTGCTGCTCCTGAGTCTAGACCCATGATGCATTCTGTTGCACAAGAACTATCCGCTACTGCACAGGCTCGTCTTTCTCAACCATTTGATATGATAACCCTAAGCAAGCTTATAGAGGATTTTTAA 3387 0.3888 MTNHQKAIASVFYTLLISLLPLKITASLTTVAEALAKWSLSPSLPSWSLTNHINLCNWDALVCDISNTTVSKINLSNVNISGKLADLDFTSLPHLTLLNLNGNRFGGSIPSTIDNLSKLSFLDLGDNLLEGTLPSELGQLRELQHVSFFNNSLNGTIPYQFTNLPKNKWNGTIPESMYGNLGKLEYLDLTNGSLEGKLSSNLSMLSNLKHLRLGNNMFNSPIPAEIGSISRLQILELNSISAHGEIPSSIGQLKELVHLDLRLNFLNSKVPSEIGLCTNLTSLSLAENNLTGSLPLSLANLTKLSELGLSDNFFSGQISASLISNWTELTSLQVQNNSLIGKLPPQIGLLKKINYLYMYKNLFSGPIPEEIGNLKEMTELDLSDNHFSGPIPRTIWNLTNITLIKLFFNNLSGNIPEDIGNLTSLQVFDVDNNNLDGELPHTIAHLTSLTDFSVFSGELPSDMCSGLNLVTLSVNNNSFSGPLLNSLKNCSSLVRVRLDDNKFNGNITEAFGIHPNLTFIRLSRNHLVGYLSPDWGKCINLTEMEMSGNKFSGKIPSELSKLSKLKILSLHSNEFTGNIPSEIGDLSLLLNFNLSRNHLSGDIPESIGRLAWLNNVDLSNNNFRGSIPKEIGNCNRLLSMNLSHNNLSGVIPYELGNLFSLQSMLDISSNNLSGEIPQNLQKLASLEFLNVSHNNLSGTIPQSFSSMVSLQSVDFSYNHLSGSIPTGAVFQNQSAEAFVGNSGLCGEVKGLECPKVLSQDNSGGANKKVLVGVTISVGGVLFIGMIGIGILLFQRKAKKQSEESKSIEDDDQSNCMVWGRDGKFTFSNLVNATNDFNEKYCIGKGGFGSVYRAELPTGQVVAVKRLNISDSDDIPKENRMSFMNEIKTLTEVRHRNIIKLYGFCSRRGEMFLVYEHVARGSLGKMLYGKEGKVELNWGTRMEIVQGLAHAIAYLHSDCSPPIVHRDITLNNILLDSDFVPHLADFGTAKLLSSNNSTWTSVAGTYGYMAPELAQTMRVTEKCDVYSFGVVVLEILMGTHPGEFLDILYSNKSLALMEVLVKDVVDQRLPPPTDETIMFTMRVALACTCAAPESRPMMHSVAQELSATAQARLSQPFDMITLSKLIEDF* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1272 1128 SUPERFAMILY L domain-like 50 267 - -
Psa3g1272 1128 Gene3D Transferase(Phosphotransferase) domain 1 917 1119 - -
Psa3g1272 1128 Pfam Protein kinase domain 838 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1272 1128 Pfam Leucine rich repeat 664 720 IPR001611 GO:0005515
Psa3g1272 1128 SMART LRR_typ_2 422 446 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 253 277 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 683 706 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 562 586 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 116 140 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 92 115 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 707 732 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 374 398 IPR003591 -
Psa3g1272 1128 SMART LRR_typ_2 205 229 IPR003591 -
Psa3g1272 1128 Gene3D Phosphorylase Kinase; domain 1 795 916 - -
Psa3g1272 1128 Gene3D Ribonuclease Inhibitor 22 166 IPR032675 -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 354 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 33 167 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 352 1105 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 164 280 - -
Psa3g1272 1128 SUPERFAMILY RNI-like 217 528 - -
Psa3g1272 1128 SUPERFAMILY L domain-like 459 733 - -
Psa3g1272 1128 SUPERFAMILY Protein kinase-like (PK-like) 819 1104 IPR011009 -
Psa3g1272 1128 Gene3D Ribonuclease Inhibitor 167 322 IPR032675 -
Psa3g1272 1128 Gene3D Ribonuclease Inhibitor 453 755 IPR032675 -
Psa3g1272 1128 Gene3D Ribonuclease Inhibitor 323 452 IPR032675 -
Psa3g1272 1128 CDD STKc_IRAK 842 1104 - -
Psa3g1272 1128 ProSitePatterns Tyrosine protein kinases specific active-site signature. 962 974 IPR008266 GO:0004672|GO:0006468
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 33 167 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 352 1105 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 164 280 - -
Psa3g1272 1128 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 243 354 - -
Psa3g1272 1128 ProSiteProfiles Protein kinase domain profile. 836 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa3g1272 1128 ProSitePatterns Protein kinases ATP-binding region signature. 842 864 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1272 Psa-Chr3 114522356 114526185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1272 32 628 Receptor kinase-like Gene Family AT4G08850 32.653 4.25e-81 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Psa3g1272 Pkinase 2.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1272 - - gmx:100786462 1446.41