Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1262 ATGGATCAACAAGGGTTACTTCGCACTAAGAAACCCTTCATTGCAGACGATGAGATCATGGAGCTATTATGGCAAAACGGTCAAGTTGTCACGCAGACTCAAAATCACCGGTATATCAATAAACCACCGCCGGGGAGAAACTCCGACGCCTCCACTCGCGGCGGATCTTCATCGCCGAGGGAGAATCAGTATCTCTTTATGCAAGAAGGCGAAATGGCTTCGTGGCTTCATTATCCTAATCCCGATGATGATGATTCTCCTTTGGATCAATCCTTCTGTGCTGATTTCCTTAACCAGCCGTCGGCTGTTAATAACAATAGTACCATGCAAACTCCACCACGGAGGTCCGAGCAGGTGCCTCCGGTTAGAGCCGAACCAGAATCATTGTCGATTTTGAGAGCTTTTGAATCAACGGTTGTAGATTCGTGCGATACTCCAGCTGTGATGCCGTTGGCGATTTCAGAGAGGATTAGAAGTTCGACGGAGCCAACGGAAGGAGCGACATGCACATCGGTGCCAGGGACGACGTTTGATGAACCGGAAAGTTCGAGTAGCAGTGGAGAACCGGTTCGGAAGGTAGCGGAGCTGGACCGGAAGCGGAAGGAAAAGGAAGCGGATGAATGGAAGTATCTTAGCGAGGATGTTGATTTTGAATCTGCGGAAGCAAAAAGTAAAATCGGTGGATCATCAAACAAGAGATCTCGTGCTGCTGAGGTCCATAGTCTCTCAGAGAGGAGGCGCCGTGATCGGATTAATGAAAAGATGAAAGCCCTGCAAGAACTTATACCTCAATCTAATAAGTCCGACAAAGCGTCTATGCTGGATGAGGCAATTGAGTATTTGAAGTCACTGCAGTTACAAGTTCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCACCAATTGGAATGGGAATAAACAGACCAGTAATGCCGTTTCCCAGTATGCTGCCCGGTTCTGCTTTGCCTGCAAGTTTCGGGCCAAGGTTCGCTATGCCTCCTTTCCACGTACCGCATGTTCCTACACCCGATTCATTCACAATGCCAGCAGCAAATCTGGCAGATAATAACATGCCCACCTCAGTTGGAACACATGATGCAAATCAGCAACCTATCCCAAACTTCACTGATCCTTATCATCAATATCTTGGACACCACCAGATGCAGTTTCAATTAATGCAGAATAAGGCAATGAACCAACCAAATGTCAGCAAGTCAGAAATCCGCCAGTCAGGAGATAAATGA 1275 0.4737 MDQQGLLRTKKPFIADDEIMELLWQNGQVVTQTQNHRYINKPPPGRNSDASTRGGSSSPRENQYLFMQEGEMASWLHYPNPDDDDSPLDQSFCADFLNQPSAVNNNSTMQTPPRRSEQVPPVRAEPESLSILRAFESTVVDSCDTPAVMPLAISERIRSSTEPTEGATCTSVPGTTFDEPESSSSSGEPVRKVAELDRKRKEKEADEWKYLSEDVDFESAEAKSKIGGSSNKRSRAAEVHSLSERRRRDRINEKMKALQELIPQSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPIGMGINRPVMPFPSMLPGSALPASFGPRFAMPPFHVPHVPTPDSFTMPAANLADNNMPTSVGTHDANQQPIPNFTDPYHQYLGHHQMQFQLMQNKAMNQPNVSKSEIRQSGDK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1262 424 CDD bHLH_AtPIF_like 235 298 - -
Psa3g1262 424 Gene3D - 230 293 IPR036638 GO:0046983
Psa3g1262 424 MobiDBLite consensus disorder prediction 101 115 - -
Psa3g1262 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Psa3g1262 424 MobiDBLite consensus disorder prediction 220 245 - -
Psa3g1262 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 123 417 IPR031066 -
Psa3g1262 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 7 104 IPR031066 -
Psa3g1262 424 MobiDBLite consensus disorder prediction 191 205 - -
Psa3g1262 424 MobiDBLite consensus disorder prediction 157 189 - -
Psa3g1262 424 MobiDBLite consensus disorder prediction 156 205 - -
Psa3g1262 424 MobiDBLite consensus disorder prediction 35 59 - -
Psa3g1262 424 SMART finulus 241 290 IPR011598 GO:0046983
Psa3g1262 424 Pfam Helix-loop-helix DNA-binding domain 239 285 IPR011598 GO:0046983
Psa3g1262 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 301 IPR036638 GO:0046983
Psa3g1262 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 104 - -
Psa3g1262 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 123 417 - -
Psa3g1262 424 MobiDBLite consensus disorder prediction 101 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1262 Psa-Chr3 113980935 113986898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1262 16 394 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 36.232 2.11e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa3g1262 HLH 5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1262 - - gmx:100797225 475.322