Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1259 ATGGAAGCTCGTCCTGCTTTCTCAATTGAAAGATCAAGTGCCCAACAGCTGAATAACATAGGAATGTCTGGAGCTCTTCCTTCATCGATGTCTATCCATCCAACACCTCTAGACGAGACATACCCCAGATTATCTGATTCGCAGCTGGCTTTTGTGGAAAAAGATCTTAAGACAAGAACTTTTAATCATTCAGGTCATATAAGTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCCCCCGGATATTCAACAGACCTTCATCACTCGTCCCTCTCGCCTCATGAAAAATCCTCTAGAAATGCTCATTTTATTGCACAGCCATTGAGTAGCGTGGCTCCAATGCCATTACCGTATTCTTCAAATAATGGACCAGTACCTTCTACCACATCAACACCTTATTCCAATGGAAACAGTGCTTCATGGCATGCAGATTCCCTGCCTAGCTTTCTTGATTTCTCAGTGAATGCCTCAATTAATAATAATCCATTAGAGAGCAGTGACTGCAATATTATGGCTACTGAGGAGTTTTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGACGACGATACTTTGACTTCTAATTGGAATGATATTCTTGCTGACAATATTCAAGATCTTGAGCCAAAGGCGGTGGATCCCATTTCAAAGTCATCTTCACAATTTTCGGCAGGACACCAATCCCAAGGCCATCAACAACTTCCAGCTCTATCTGGAGAAAACCATGTTGGTGTTGCTCCATCGTCCTCAACAAATTCTGCATCTGCCAAGCCACGGATGCGTTGGACTCCTGAACTTCACGAGGCATTTGTGGAGGCTGTCAGCCAACTTGGTGGAAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGACTAACTATATATCATGTTAAAAGCCACTTACAAAAATACAGGACAGCTAGATATAGACCAGAATCATCTGAAGGAGCTGGAGAGAAAAACTTAAGCCCCATTGAAGATATTTCATCTCTAGATTTGAAAACTGGTATTGAGATCACAGAAGCTCTACGACTGCAAATGGAGGTTCAGAAACGGTTGCATGAACAGCTTGAGAACAATGAAAAAGGATGA 1122 0.4287 MEARPAFSIERSSAQQLNNIGMSGALPSSMSIHPTPLDETYPRLSDSQLAFVEKDLKTRTFNHSGHISSSGAVGHMFSSSPGYSTDLHHSSLSPHEKSSRNAHFIAQPLSSVAPMPLPYSSNNGPVPSTTSTPYSNGNSASWHADSLPSFLDFSVNASINNNPLESSDCNIMATEEFSKRNDWQEWADQLISDDDTLTSNWNDILADNIQDLEPKAVDPISKSSSQFSAGHQSQGHQQLPALSGENHVGVAPSSSTNSASAKPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAGEKNLSPIEDISSLDLKTGIEITEALRLQMEVQKRLHEQLENNEKG* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1259 373 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Psa3g1259 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Psa3g1259 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Psa3g1259 373 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Psa3g1259 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 368 - -
Psa3g1259 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 368 IPR044848 GO:0003700
Psa3g1259 373 Pfam MYB-CC type transfactor, LHEQLE motif 347 368 IPR025756 -
Psa3g1259 373 Gene3D - 261 320 - -
Psa3g1259 373 Coils Coil 350 370 - -
Psa3g1259 373 MobiDBLite consensus disorder prediction 219 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1259 Psa-Chr3 113881544 113887725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1259 1 368 G2-like Transcription Factor Family AT4G28610 48.011 2.56e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa3g1259 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1259 - - gmx:100810560 597.045