Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1243 ATGGCAGGCTTCTCCGCGCAACGTCTTCTTTACGCATTCTGCTCCTCCTCCGCCACAGCGGCGGGGTCCCTCATCGGTGGCACTTTCCACCCACGACAGTTTTCAGCGGGGAACGTGGCTCGCGCGACGGCGGCGAAAATTGATAAGGAGCCTTGGTGGAAGGAGTCTATGGAAAAGGTTCGCAACATTGGGATCTCAGCGCACATTGATTCCGGGAAGACAACGTTGACGGAGCGGGTACTGTTCTACACTGGTCAGATCCACAAGATGCACGAAGTTCGCGGGAAAGATGGCTGTGGTGCGAGGATGGATAGTATGGTTTTGGAGAGAAAGAAGGGAATCACCATTAAGTCTGCTGCTACTTATTGTAATTGGAAAGGCTCTAAGATCAACATAATTGACACGCCTGGTCACGTTGATTTCACCATTGAAGTCGAGAGGGCTTTGCGTGTTATTGACGGCGCCATTCTTCTTCTTTGTAGTGTTGGTGGTGTGCAAAGTCAGTCCATTACTGTTGATCGCCAAATGAGAAGATACCAAGTTCCGAGAATTGCGTTTATCAATAAGCTTGATCGAATGGGAGCTGATCCATGGAAAGTTTTAAACCAGGCTAGGTCTAAGCTTCGCCATCATACTGCTGCAGTTCAAGTTCCAATAGGTTTGGAGAATGAATTCACGGGACTTATTGATCTTGTCAAGTTAAAGGCCTACTATTTTGAAGGTCCACATGGCAATGACGTTGTCGTTAAACAAGTTCCTTCAAACATGGAAGCTTTCGTGGCCGATAAAAGACGCCAACTCATAGAAGCAGTGTCAGAGGTTGATGATATACTTGCCGAAGCTTTTCTCAGCGACGACACCATTTCAGATGCTGATCTTGACGAAGCAATTCGCAGGGCTACCATAGCTCGGAAATTTATACCGGTTTTCATGGGCAGTGCTGTCAAAAACAAGGGGGTACAACCACTTTTGGATGGTGTACTTAGTTATTTGCCATGTCCAATTGAAGTTAGAAATTATGCTCTTGACCAATCTAACAATGAAGAGAAGGTTGAGCTTACCGGAAGTCCTGATGCACCCCTTGTAGCATTGGCTTTCAAGTTGGAGCAAACACAGTCGGGACAGTTAACCTATCTAAGAATTTATGACGGCGTCATTCGTAAGGGTGGTTTTATTTTTAATGTCAACACAGGTAAGAATATTAAGATTTCTCGTCTGTTTCAAATGCATTCTGATGAAATGCATGACATTCAAGAGGCCCATGCTGGTCAAATAGTTGCGGTGTTTGGGCCGGAATGTGCATCAGGAGATACTTTTACTGATGGGTCAGTTAAGTACACAATGACTTCTATGGCTATTCCTGAACCCGTGATGTCATTAGCGGTACAACCTGTCTTGCAAGATTCTGGAGGGAAATTTTCAAAAGCTTTGAACCGTTTCCAGAGAGAGGATCCTACTTTCCGTGTTGGCTTGGATCCGGAGAGTGGGCAGACAATCATTTCTGGTATGGGAGAAATGCATTTACAGATTTATATTGAACGCATTATGATGGAGTACAACATTGCTACTTCAGTTGGAAAACCTCGTGTGAACTTCAGAGAAACTATTACTCAACGTGCTACTTTTGATTATTTACATAAGAAGCAATCCGGTGGACAAGGACAATATGCAAGGGTGATTGGTTATATTGAACCACTTCCTGGAGCTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAAGCTATTCCATCAAATTTTATGCCTGCAATTGAAAAAGGCTTTAAAGAAGCTGCCAACTCTGGTGCCTTAATCGGACATCCAGTTGACAATCTCCGAGTTGTCTTGACAGATGGCGCTGCTCATGCTGTTGACTCCAGTGAACTTGCCTTTAAACTGGCTTCTATCTGTGCTTTTAGACAGTGTTACGGAGCTTCTAAACCAGTTATATTAGAACCTATCATGCTTGTTGAGTTGAAAGTACCCACAGAATTTCAAGGAGCTGTCGCTGGTGAATTGAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAAGATGGGGATGATTCTATCATTAGAGCTCATGTCCCTCTTAACAATATCTTTGGGTATTCTACAGTTCTTCGTTCGATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGGAACATTCAGCTGTTTCTCATGATGTTCAAACCCAATTGATAAACACATACAAGGGCAATAAGGCAGCTGAATGA 2241 0.4373 MAGFSAQRLLYAFCSSSATAAGSLIGGTFHPRQFSAGNVARATAAKIDKEPWWKESMEKVRNIGISAHIDSGKTTLTERVLFYTGQIHKMHEVRGKDGCGARMDSMVLERKKGITIKSAATYCNWKGSKINIIDTPGHVDFTIEVERALRVIDGAILLLCSVGGVQSQSITVDRQMRRYQVPRIAFINKLDRMGADPWKVLNQARSKLRHHTAAVQVPIGLENEFTGLIDLVKLKAYYFEGPHGNDVVVKQVPSNMEAFVADKRRQLIEAVSEVDDILAEAFLSDDTISDADLDEAIRRATIARKFIPVFMGSAVKNKGVQPLLDGVLSYLPCPIEVRNYALDQSNNEEKVELTGSPDAPLVALAFKLEQTQSGQLTYLRIYDGVIRKGGFIFNVNTGKNIKISRLFQMHSDEMHDIQEAHAGQIVAVFGPECASGDTFTDGSVKYTMTSMAIPEPVMSLAVQPVLQDSGGKFSKALNRFQREDPTFRVGLDPESGQTIISGMGEMHLQIYIERIMMEYNIATSVGKPRVNFRETITQRATFDYLHKKQSGGQGQYARVIGYIEPLPGAKFEFENMLVGQAIPSNFMPAIEKGFKEAANSGALIGHPVDNLRVVLTDGAAHAVDSSELAFKLASICAFRQCYGASKPVILEPIMLVELKVPTEFQGAVAGELNKRKGVIVGNDQDGDDSIIRAHVPLNNIFGYSTVLRSMTQGKGEFTMEYKEHSAVSHDVQTQLINTYKGNKAAE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1243 746 Pfam Elongation Factor G, domain III 453 527 IPR041095 -
Psa3g1243 746 PRINTS GTP-binding elongation factor signature 62 75 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 PRINTS GTP-binding elongation factor signature 111 119 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 PRINTS GTP-binding elongation factor signature 131 141 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 PRINTS GTP-binding elongation factor signature 147 158 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 TIGRFAM EF-G: translation elongation factor G 56 740 IPR004540 GO:0003746|GO:0005525|GO:0006414
Psa3g1243 746 CDD EF-G 62 334 - -
Psa3g1243 746 SUPERFAMILY EF-G C-terminal domain-like 453 530 IPR035647 -
Psa3g1243 746 Coils Coil 745 746 - -
Psa3g1243 746 Pfam Elongation factor G, domain IV 528 643 IPR005517 GO:0005525
Psa3g1243 746 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 13 746 IPR045044 -
Psa3g1243 746 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 13 746 - -
Psa3g1243 746 SMART EFG_C_a 648 735 IPR000640 -
Psa3g1243 746 Pfam Elongation factor Tu GTP binding domain 59 332 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 TIGRFAM small_GTP: small GTP-binding protein domain 59 232 IPR005225 GO:0005525
Psa3g1243 746 SUPERFAMILY EF-G C-terminal domain-like 651 739 IPR035647 -
Psa3g1243 746 Gene3D - 652 722 - -
Psa3g1243 746 Pfam Elongation factor Tu domain 2 374 440 IPR004161 GO:0005525
Psa3g1243 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 332 IPR027417 -
Psa3g1243 746 Gene3D - 534 736 IPR014721 -
Psa3g1243 746 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 58 335 IPR000795 GO:0003924|GO:0005525
Psa3g1243 746 CDD EFG_mtEFG1_IV 532 642 IPR005517 GO:0005525
Psa3g1243 746 SUPERFAMILY Ribosomal protein S5 domain 2-like 532 647 IPR020568 -
Psa3g1243 746 SMART EFG_IV_2 529 646 IPR005517 GO:0005525
Psa3g1243 746 CDD mtEFG1_II_like 361 441 - -
Psa3g1243 746 Hamap Elongation factor G [fusA]. 56 739 IPR004540 GO:0003746|GO:0005525|GO:0006414
Psa3g1243 746 Gene3D - 52 337 IPR027417 -
Psa3g1243 746 Pfam Elongation factor G C-terminus 649 734 IPR000640 -
Psa3g1243 746 SUPERFAMILY Translation proteins 299 451 IPR009000 -
Psa3g1243 746 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 104 119 IPR031157 -
Psa3g1243 746 Gene3D Elongation Factor G (Translational Gtpase), domain 3 460 533 - -
Psa3g1243 746 Gene3D Translation factors 342 459 - -
Psa3g1243 746 CDD EFG_III 454 529 IPR009022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1243 Psa-Chr3 112287979 112291196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1243 376 536 Eukaryotic Initiation Factors Gene Family AT3G22980 23.596 2.22e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1243 K02355 - gmx:100783315 1234.55