Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1234 ATGGAGAGTAGTGTTGATGATGAGAGAAGATTCAGAGGAAACAGTAAGACTGAAAGTTCGTCACGAAGGGTGAGCAGTGATGTGGAATATCTGTTTCCTAGCTCTGTTAATAGAGAGGACAATGACGAAGAAGAGGCTTTGAAATGGGCTGCAATTCAGAGGCTTCCAACTGTTGCGCGTTTAAGGACAGGTTTGTGGATGACCTCTGAAGGACAAGCTAATGAAATTGATATACACCATCTTAAGCAAGAAGAAAAAAAGTTTTTGCTAGAAAGACTTGTGAGAATAGCTGATGTTGATAATGAGAAGTTCTTGTTGAAGCTCAGGGATCGTGTGCATAGAGTTGGAATTAATTTTCCTACAATCGAAGTCCGATTTGAGCACTTGAAGATTGAAGCAGAAGTTCAAGTAGGAAAGAGAGCTTTGCCTACTCTCATTAATTACACTCTTGATCTGATAGAGGCTCCATTTAACTATATACTAAGAAAAAGAAGACAACATCTCGACATTCTCCAGAATGTTAGTGGAATAATAAAGCCTGGCAGGATGACATTGCTTTTGGGCCCTCCAAGTTCTGGAAAAACAACACTCCTTTTGGCCTTGGCTGGAAAACTTGATCCCAATCTAAAGGTCACTGGAAAGGTGACTTACAATGGTCATGAGATGAATGAGTTTGTACCTCAAAGAACTGCTGCTTATGTCAGTCAAAACGATCTTCACATTGGAGAGTTGACAGTTAGAGAAACTTTAGCCTTCTCAGCAAGATTCCAAGGTGTTGGACCTAGAATAGATATGCTAGAAGAAGTATCTAGAAGAGAAATTGAGAGAAACATATTCCCTGATCCAGATATCGATATCTATATGAAGGTAGGAGACGGTGCAACGGTAACAACTAATTTAGTTTCATTTGCTTTATACTTTCAGCTTTTGGGGCTAGAGAACTGTGCAGATACAGTGGTGGGAGGTCCAATGTTAAGGGGCGTTTCTGGCGGACAAAGGAAACGGGTTACAACAGGGGAGATGCTAGTAGGAACAGCTAAGGCTCTTTTCATGGATGAAATATCTACTGGTTTGGATAGCTCAACAACTTATCAAGTTGTGAAATCAGTGAAGCAGTCTGTCCAACTTCTCAATGGAACCGCTGTGATCTCACTATTGCAGCCACCACCAGAGACTTATGATCTTTTTGATGACATTATTCTACTCTCCGAGGGACACATTGTGTACCAGGGTCCTTGTCAACATGTTCTAGAATTTTTTGCTTCAATAGGTTTCAAGTGTCCCGAGAGAAAATCTGTGGCAGACTTTTTACAAGAAGTGACATCAATGAAAGATCAGGAGCAATATTGGGTAGAAAGAAGGAAGCCTTATAAATTTGTGACACCTAAAGAGTTTGCTGAGATATTTGAGTCATTTCATGTTGGAAGAACTCTTGGTAATGAACTCGTTACTCCATTTGACAAGCTTAAAAGCCACCCAGCTGCTTTGACGACCAACACGTATGGAATTGGAAAGTGGGAATTATTCAAAGCTTGCATAGCAAGAGAGTATTTACTCATGAAGCGCAATGCATTTTACTATAAATTCAAACTTTGCCAAATTTCTGTGATGGCTATTGTTACCATGACCGTTTTTCTCCGAACTGGAATGCACCGCAATTCAGTGATTGATGGGGGCATTTATGCCGGTGCATTGTTCTTCGGAAATTTGGTGGTCATGTTTAATGGATTAGCTGATCTTGCGACGACTATTGCGAGGCTTCCGGTGTTTTACAAGCAAAGGGACCTTCTCTTCTACCCTTCTTGGGCATATGCTCTTCCTACATGGATCCTGAAAATTCCGATAACATTTGCTGAAGCAGCTGCTTGGTCATTTCTTACCTATTACGTCATCGGTTACAGTCCTGAATTTGCAAGATTAATTAAGCAATACTTCCTTCTCATACTTATCAACCAAATGGGTACTTCACTATTCCGATTACTAGGAGCAATTGGTAGAGAAATGGCAGTGGCTGCAACACTTGGGTCATTTATATTGACCTTTCTCGTTGCCATGGGTGGCTTTGCTGTCTCGAGAGATAGTATTAAAAAAGGGTGGCTATGGGGCTACTGGATATCACCTATAATGTACGCAACGAATGGCTTAATGAATAACGAGTTCCTCGGGAATGCTTGGGGAAAAGTTCTTCCTAACTCAACTGAACCTCTAGGAGTTCAAGTTTTGAAATCTAAAGGGTTCTTTACAGAATGGTACTGGTATTGGATATCTTTTGTGGCAATGATTGGATACACGTTATTGTTCCACTTTTGTTACACTCTTGCTCTATCTTACTTCAATCCAATTGAGAAGCGTCGGGCTGTGAAATCAGAGCAATCTCAAAGCAATGGGGAGAATAGTGGAAGAAAAAGAGGAATGGTTCTTCCTTTTGAACCACATTCTATAACCTTTGATGATGTCTCATATTCTGTAGACATGCCTCAGGCAATGAGGAGTCAGGGTGTCACAGAAGATAAGTTGGTTCTTTTGAACCGTGTCAGCGGAGCTTTTAGGCCAGGTGTTCTCACTGCACTTATGGGTGTCACTGGTGCTGGAAAAACAACTTTGATGGATGTACTTGCTGGTAGAAAAAGCGGGGGATATATTACTGGGAATATCACAGTTTCTGGATATCCCAAAAAGCAAGCTACCTTTGCAAGAATTTCGGGATACTGTGAGCAAAATGATATACACTCTCCTCATATTACTGTCTATGAATCCTTGCTCTATTCAGCATGGCTTCGATTGCCTGCGGAAATCAATACAGAAACTAGGAAGATGTTCGTTGAGGAAGTCATGGAGCTAGTTGAGCTGAACTCAATAAGGGATGCATATGTTGGTCTCCCCGGTGTTACCGGTCTCTCAACTGAGCAGCGAAAAAGGTTGACTATTGCAGTTGAGTTGGTTGCTAATCCTTCGATCATATTCATGGATGAGCCAACTTCTGGGCTAGATGCAAGGGCTGCAGCTATTGTTATGAGAGCGGTTAGGAACATAGTAGACACCGGAAGAACAATTGTCTGTACCATTCACCAGCCCAACATTGATATCTTTGAATCTTTTGACGAGCTTTTCTTAATGAGGAGGGGAGGACAAGAGATATATGTGGGGCCTCTTGGACGTCATTCTTCACAATTAATTAACTACTTTGAGGGAATTCAAGGTGTCACTAAGATTAAAGATAGCTACAATCCAGCAACTTGGATGTTGGAAGTCTCGAATGCTGCAAGAGAAATGGAAACGGGGATTAATTTTGCCGAGGTGTACAAGAATTCAGCATTATACAGGAGAAACAAAGCTCTTATTGAAGAATTGAGCACTCCATCTCCCGGTTCAAAGGACCTTGATTTTCCTTCAAAGTACTCAAGGTCCTTTTTTGTTCAATGTATGGCTTGCTTATGGAAACAACATTGGTCTTACTGGCGCAATCCGTATTACAATTTCATGAGATTTATCTTCACAGTCGCCGTTGCCTTGTTGCTTGGGGGTGTGTACTGGAAAGTTGCTGCCAAAATTGAAACCCAACAAGATTTCTTTAATTCCATGGGCTTTCTGTTTACTGCTACTATTACAATTGGTAGCAAGAATTGTAGTTCAGTGCAACCAGTTATAACTGTAGAGCGGGTAGTCTTTTACAGGGAAAGGGCTGCAGGAATGTATTCGGAGTTGGCATATGCTGTTTCTCAGGCTCTAATTGAAGTCCCTTATAATCTTTTGCAAGCTGTGATTTATGCGATTATAGTTTTTTCACTGCTTGGTTATGAGTGGACCGCCGCTAAGTTCCTTTGGTACATATTTTTCATGTTCTTCACTTTCCTTTACTATACCTACTATGGCATGATGGCAACAGCCATAACCCCAACCCAAGCTATGGCTGCTTTGTTCAGCAGTGCATCCAATTCAATGTTCAATCTCTTCTCGGGATTCTTAGTCCCACAAACAAGGATCCCTGTATGGTGGAGTTGGTTTTATTGGATAAATCCAGCAGCTTGGACTCTGAATGGGCTGGTGACTTCACAGTTTGGTGATATGAAGGATGATTTGGATTTTGATGGAAAGATTGTTCCCATTCGAGACTTTTTGCGGAGTTACTTTGGTTTCAGGCAGGAATTTTTGGGAGTTGTTGCAGCTGTAGTTGTTGGATTTACCATACTTTTTGTATTGGTCTTTGCCCTATCCATCAAGACAATAAGTTTTCAACGACGCTGA 4245 0.4125 MESSVDDERRFRGNSKTESSSRRVSSDVEYLFPSSVNREDNDEEEALKWAAIQRLPTVARLRTGLWMTSEGQANEIDIHHLKQEEKKFLLERLVRIADVDNEKFLLKLRDRVHRVGINFPTIEVRFEHLKIEAEVQVGKRALPTLINYTLDLIEAPFNYILRKRRQHLDILQNVSGIIKPGRMTLLLGPPSSGKTTLLLALAGKLDPNLKVTGKVTYNGHEMNEFVPQRTAAYVSQNDLHIGELTVRETLAFSARFQGVGPRIDMLEEVSRREIERNIFPDPDIDIYMKVGDGATVTTNLVSFALYFQLLGLENCADTVVGGPMLRGVSGGQRKRVTTGEMLVGTAKALFMDEISTGLDSSTTYQVVKSVKQSVQLLNGTAVISLLQPPPETYDLFDDIILLSEGHIVYQGPCQHVLEFFASIGFKCPERKSVADFLQEVTSMKDQEQYWVERRKPYKFVTPKEFAEIFESFHVGRTLGNELVTPFDKLKSHPAALTTNTYGIGKWELFKACIAREYLLMKRNAFYYKFKLCQISVMAIVTMTVFLRTGMHRNSVIDGGIYAGALFFGNLVVMFNGLADLATTIARLPVFYKQRDLLFYPSWAYALPTWILKIPITFAEAAAWSFLTYYVIGYSPEFARLIKQYFLLILINQMGTSLFRLLGAIGREMAVAATLGSFILTFLVAMGGFAVSRDSIKKGWLWGYWISPIMYATNGLMNNEFLGNAWGKVLPNSTEPLGVQVLKSKGFFTEWYWYWISFVAMIGYTLLFHFCYTLALSYFNPIEKRRAVKSEQSQSNGENSGRKRGMVLPFEPHSITFDDVSYSVDMPQAMRSQGVTEDKLVLLNRVSGAFRPGVLTALMGVTGAGKTTLMDVLAGRKSGGYITGNITVSGYPKKQATFARISGYCEQNDIHSPHITVYESLLYSAWLRLPAEINTETRKMFVEEVMELVELNSIRDAYVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNIVDTGRTIVCTIHQPNIDIFESFDELFLMRRGGQEIYVGPLGRHSSQLINYFEGIQGVTKIKDSYNPATWMLEVSNAAREMETGINFAEVYKNSALYRRNKALIEELSTPSPGSKDLDFPSKYSRSFFVQCMACLWKQHWSYWRNPYYNFMRFIFTVAVALLLGGVYWKVAAKIETQQDFFNSMGFLFTATITIGSKNCSSVQPVITVERVVFYRERAAGMYSELAYAVSQALIEVPYNLLQAVIYAIIVFSLLGYEWTAAKFLWYIFFMFFTFLYYTYYGMMATAITPTQAMAALFSSASNSMFNLFSGFLVPQTRIPVWWSWFYWINPAAWTLNGLVTSQFGDMKDDLDFDGKIVPIRDFLRSYFGFRQEFLGVVAAVVVGFTILFVLVFALSIKTISFQRR* 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1234 1414 SMART AAA_5 180 406 IPR003593 -
Psa3g1234 1414 SMART AAA_5 851 1052 IPR003593 -
Psa3g1234 1414 Pfam ABC-2 type transporter 1140 1353 IPR013525 GO:0016020|GO:0140359
Psa3g1234 1414 Pfam ABC-2 type transporter 508 720 IPR013525 GO:0016020|GO:0140359
Psa3g1234 1414 CDD ABCG_PDR_domain1 158 411 IPR034001 -
Psa3g1234 1414 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 155 429 IPR003439 GO:0005524
Psa3g1234 1414 CDD ABCG_PDR_domain2 811 1049 IPR034003 -
Psa3g1234 1414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 428 IPR027417 -
Psa3g1234 1414 Pfam ABC-2 type transporter 387 440 IPR043926 GO:0140359
Psa3g1234 1414 Pfam Plant PDR ABC transporter associated 725 787 IPR013581 -
Psa3g1234 1414 Gene3D - 814 1058 IPR027417 -
Psa3g1234 1414 MobiDBLite consensus disorder prediction 1 26 - -
Psa3g1234 1414 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 16 1414 - -
Psa3g1234 1414 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 1050 IPR027417 -
Psa3g1234 1414 Pfam ABC-transporter N-terminal 78 147 IPR029481 -
Psa3g1234 1414 Gene3D - 157 464 IPR027417 -
Psa3g1234 1414 MobiDBLite consensus disorder prediction 1 17 - -
Psa3g1234 1414 Pfam ABC transporter 171 354 IPR003439 GO:0005524
Psa3g1234 1414 Pfam ABC transporter 842 994 IPR003439 GO:0005524
Psa3g1234 1414 PANTHER ATP-BINDING CASSETTE TRANSPORTER 16 1414 - -
Psa3g1234 1414 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 814 1066 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1234 Psa-Chr3 111888184 111896013 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1234 850 1065 Calmodulin-binding Proteins AT2G36910 25.991 4.70e-06 49.7