Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1227 ATGGCTTCCTTCACTTGCTCCGCCTCTGACCTCCACGCTCTCCTCGGAACCAACTCAAACTCCACCGCCGCTGCAGAATACATCTGCAACAACTTTAATGCTGTTGCAAACAAGTTCATAGACACATCCTACGCCGTTGACAACACCTACCTTCTCTTCTCCGCTTACCTGGTTTTCGCCATGCAACTCGGTTTCGCAATGCTCTGCGCCGGTTCCGTTCGTGCTAAAAACACCATGAATATTATGTTAACAAACGTCCTCGACGCCGCAACCGGTGGTATCTTTTTCTATGTTTTCGGTTTTGCCCTAGCTTACGGTACACCTTCAAATGGTTTCATCGGTAAACATTTCTTCGGTTTAAGCGGTTTTCCTTCTCAGTCTTTTGATTACGGATTCTTTCTGTATCAATGGGCTTTCGCAATCGCTGCTGCAGGAATCACTAGTGGCTCTATTGCTGAGAGAACACAGTTTGTTTCTTATTTGATCTATTCATCTTTTTTAACTGGTTTGGTTTATCCGATTGTTGCTCATTGGTTTTGGTCTTCTGATGGTTGGGGTAGTCCTGTTAGATCTGAGAATCTCTTGTTTGGTTCTGGTGTTATTGATTTTGCTGGTTGTGGTGTTGTTCATTTAGTTGGTGCTGTTGCTGGTTTTTGGGGTGCTTTCATTGAAGGACCAAGAATAGGTAGATTCGATCATGAAGGTAGGGTTGTTTCCATGAGAGGACATAGTGGTACTTTAGTTGTTATGGGAACGTTCTTGTTATGGTTTGGTTGGTACGGTTTTAACCCTGGTTCTTTTCTTAACATCTTGAAAATATACGGTGAAAGTGGTAATTCATATGGTCAATGGAGTGCTATAGGAAGAACAGCAGTGACAACAACGTTAGCTGGATGCACTGCAGCTTTGACAACATTGTTTGGTAAACGCATGCAAACCGGGCATTGGAATGTTACTGATGTATGCAATGGTCTTCTCGGTGGTTTTGCTGCTATAACCGCAGGTTGTTCTGTTGTCGATCCATGGGCTGCTGTTATTTGTGGATTCGTTGCTGCTTGGGTTTTGATTGGATGCAATTTACTGGCTGATAAGTTTCATTACGATGATCCTCTTGAAGCTGCTCAACTTCACGGTGGTTGTGGAGCATGGGGGATTATTTTCACTGCCTTGTTTGCTAAGAAACAGTATGTTATGGAAGTTTACGGCGGTTCGCCGGATAGACCTTATGGTTTGTTTTTGGGAGGTGGTGGAAGGTTGTTGGGTGCACATTGTGTTCAGATTGTGGCTATTGTTGTTTGGGTTAGTGTTACTATGGGAACACTGTTTTTTATTCTCCATAAGATGAAATTGCTTAGGACTTCAGCTGAAGAAGAAATGGCTGGTTTGGATTTAACTAGCCATGGTGGAGTGGCTTATGAGTATCATGAAGAACTTGAATTACATTCCAAGAAACGTGCTTTTGAGATGTGA 1470 0.4306 MASFTCSASDLHALLGTNSNSTAAAEYICNNFNAVANKFIDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYVFGFALAYGTPSNGFIGKHFFGLSGFPSQSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSSDGWGSPVRSENLLFGSGVIDFAGCGVVHLVGAVAGFWGAFIEGPRIGRFDHEGRVVSMRGHSGTLVVMGTFLLWFGWYGFNPGSFLNILKIYGESGNSYGQWSAIGRTAVTTTLAGCTAALTTLFGKRMQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAVICGFVAAWVLIGCNLLADKFHYDDPLEAAQLHGGCGAWGIIFTALFAKKQYVMEVYGGSPDRPYGLFLGGGGRLLGAHCVQIVAIVVWVSVTMGTLFFILHKMKLLRTSAEEEMAGLDLTSHGGVAYEYHEELELHSKKRAFEM* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1227 489 PANTHER AMMONIUM TRANSPORTER 1 487 - -
Psa3g1227 489 SUPERFAMILY Ammonium transporter 44 452 - -
Psa3g1227 489 PANTHER AMMONIUM TRANSPORTER 1 487 - -
Psa3g1227 489 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Psa3g1227 489 Gene3D Ammonium transporter AmtB like domains 24 486 IPR029020 -
Psa3g1227 489 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Psa3g1227 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1227 Psa-Chr3 111369021 111370490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1227 5 482 Inorganic Solute Cotransporters AT4G13510 73.904 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1227 K03320 - twl:120007420 803.512