Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1220 ATGAACGGAAAACCCTTCACTACTTACCTCCTTTCAATTTCACACAAAAATCAATTTCAATTGATCTCGATCTGTTTCAGAATCATGCATTTAGATCAAATGGATCTAGCTTCAGCAAAATGTGTAATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACAGTGAAGCCTGCCCCTCTTCAGAAGAACTGTACTAATATGGTTTCCGTTTTGAGGTGTTTGAAACCGGTGCTCGACGATGTTTTCGATTACAAAATCCCTTTGGATGAAAATCTGTATAGAGAATGTGAAGAGTTGGACCGGCAGGTTAACCAAGCTCGGGAGTTTATTGAAAATTGGAGCCCGAAGACAAGCAGGGTCCATAATGTTCTTCAAAGTGGAGAACTGTTGATAATGCTACAAGACACTTCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCACCATATGCAGGAACTTAAGTGTCTTAAGAAGGAATCAACATCGGTCTATATTGAAGAAGTGTTGAGAAATCAAAAGAATAATACTAAGCCTAGCTATGAATGTCAAAGGAAAATTATAGAGTTACTTAACTTGATGTCAAACCAGGAGCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATGAAATTAACCAAATTGCGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACGAAATGCCCTGAAGTCAAAAGTGATGTGTCAGTCCCGTCATACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCGGTTATTGTTGCTTCAGGTCAAACATACCAGAGACAGTCCATCCAAACCTGGCTTGATAGCGGGCTGAATGTTTGTCCCAAGACTCATCAGAGACTTAACCATGCAATTCTAATTCCCAATTATACGGTTAAAGCTATGATAGCAAGTTGGTGTGAAGAAAATAATGTCGAACTTCCCCATAACTCAAAGCAGAGTAATTCTACCCAAAGTTCACCCCCCACGGATTATTTATTGCATCAAGATTTAAATCGTGCCTGTAGTTTCGGGTCTTCGCATAGTAGCAATTTCAATTCTAAATCATCTCTTCAAACTGGAAATGCATTTGAACAGCCAAAGGGTGATGACTCCTCCAGATTAAGCGGTGAAGGTGAGACCGAAATGTTTGAGCGACAATCTCATGCTCCTTCGTGTAGTCATAGCAGAAGTGAGTCATTTTCAAGTTCTATTTCTAGTACTGATTATGTACCGTCTGTTTCAAAAAAGGTGGTCGAGATATCAAATAAGCATCCAAATGTGATGTTATCTGGAGAAATTAATAATAATGTGTATCCTGCTTCTCCTGCAAACGAAAAAGTTGCGAATTTTCCAACAGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAAAAGCAACAACGCCTGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATACCAAATAAGCATCACAATGTGCTGTTGTCCGGAGAGATTAATCATAATGTTCCTGCTTCTCCTGCATATAAAGAATTTGGGAATTTTCCAACGGTATCACAGGAGCAATTTCAAAGCCCTGTATCAAAAAATGCAAAGACGCCGGGGATATCCGATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAGGGGTGTCAGGGATGTCAAATAAGCAACAAAATGTGCAGGAGAAGCAGGAAAATGTGCAGAAGCATCAAAATGTTCCAACAGTGTCAGGGATATCAAATATGCATCAAAATGTGCAGGAGAAGCATCAAAATATTTCAACGGTGTCAGGGATATCAAATAAACATCAAAATATGCAGGAGAAGCTTGAAAATGTTCCAAGAATGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCAGGAAAATGTGCAGGAGAAGCAGGAAAATGTTCCAACGGTGTCAGGGATGTCAAATAAGCATCAAAATATGCTTTTGTCTGGAGAAATTAATAATAATGTGTTTCTTGCTTCTCACGCAAATAAAGAAGTTGAGAATTTTCCAACAGTATCACGAGAGCAATTTCAAAGCCCTGGATCAGAAAATGCAGCGATACCAGGGGTATCAAATAAACATCAAAATATGCTGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCAACAAAATGTGCAGGAGAAGCATCAAAACGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAACATCAAAATGTTCCAACGGTCTCGGGGATATCAAATAAGCATCAAAATGTGCTTCTGTCTGGTGATATTAATAATAATGTGTTTCCTGCTTCTCCTGAATATAAAGAATTTGGGAATTTTCCAACGGCATCGCGAGAGCAGTTTCAAAGCCCTGGATCAAAATATCGAACGACAGAGAATGAAAATAAGTACAATAACAATAATGATTTTGTTTTTACTAGCCATTCAAGTTCAGAAGATGATGCCCGTCCTGTTTCCACCTCAGAATCTGATAAATTGACCACCGCACATGTCGGTCAGTTGATTGAATATCTACAAAGTCAATCAAAAGAAACACAAGCTTCCGCCGCCGAAGAATTGCGGCTTCTTACAAAGCATAATATGGAAAACCGTATCATTGTTGGGAAATGTGGTGCCATTATGCATTTACTTCCACTGCTATATTCAGACATGAAGATAATACAAGAGCATGCTGTGACAGCTATATTGAATTTGTCGATAAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAACTCGGCTGCAACTCTATTCAGTCTCTCAGTACCAGAAAACAGTAAGATGAAGATTGGTCGCTCCGGTGCGGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTCTTAGGGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTGTCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAGTTTCTAGTTAAGCTATTGGACCCAGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCGACAATCCCAGAGGGTCGAATAGAAATTGTACGCGAAAGGGCAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCATAGAGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTAAGCCTTCATAGCCCTAAGTTTTGTACTTTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGCACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGCAGCTAACGGTAGGGGAAAATCATGA 3507 0.3964 MNGKPFTTYLLSISHKNQFQLISICFRIMHLDQMDLASAKCVINSISRFIHLVSCQTVKPAPLQKNCTNMVSVLRCLKPVLDDVFDYKIPLDENLYRECEELDRQVNQAREFIENWSPKTSRVHNVLQSGELLIMLQDTSLRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKNNTKPSYECQRKIIELLNLMSNQELLKESIAVEKERLNAEVNKTKGELDEINQIANLVCSLRDYAMKTKCPEVKSDVSVPSYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDSGLNVCPKTHQRLNHAILIPNYTVKAMIASWCEENNVELPHNSKQSNSTQSSPPTDYLLHQDLNRACSFGSSHSSNFNSKSSLQTGNAFEQPKGDDSSRLSGEGETEMFERQSHAPSCSHSRSESFSSSISSTDYVPSVSKKVVEISNKHPNVMLSGEINNNVYPASPANEKVANFPTVSQEQFQSPGSKKATTPGISNKHQNVQEKHQNVPTVSGIPNKHHNVLLSGEINHNVPASPAYKEFGNFPTVSQEQFQSPVSKNAKTPGISDKHQNVQEKHQNVPGVSGMSNKQQNVQEKQENVQKHQNVPTVSGISNMHQNVQEKHQNISTVSGISNKHQNMQEKLENVPRMSGISNKHQNVQEKQENVQEKQENVPTVSGMSNKHQNMLLSGEINNNVFLASHANKEVENFPTVSREQFQSPGSENAAIPGVSNKHQNMLEKHQNVPTVSGISNKQQNVQEKHQNVPTVSGISNKHQNVQEKHQNVPTVSGISNKHQNVLLSGDINNNVFPASPEYKEFGNFPTASREQFQSPGSKYRTTENENKYNNNNDFVFTSHSSSEDDARPVSTSESDKLTTAHVGQLIEYLQSQSKETQASAAEELRLLTKHNMENRIIVGKCGAIMHLLPLLYSDMKIIQEHAVTAILNLSINEDNKTLIMEAGAIEPLIHVLKNGNNGAKENSAATLFSLSVPENSKMKIGRSGAVKALVELLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERAIPLLVELVESGSHRGKENAASIVLQLSLHSPKFCTFILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREAANGRGKS* 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1220 1168 MobiDBLite consensus disorder prediction 382 398 - -
Psa3g1220 1168 SMART Ubox_2 272 335 IPR003613 GO:0004842|GO:0016567
Psa3g1220 1168 Coils Coil 217 244 - -
Psa3g1220 1168 Coils Coil 657 677 - -
Psa3g1220 1168 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 828 1163 - -
Psa3g1220 1168 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 39 408 - -
Psa3g1220 1168 Gene3D - 870 1163 IPR011989 -
Psa3g1220 1168 SMART arm_5 1035 1074 IPR000225 GO:0005515
Psa3g1220 1168 SMART arm_5 953 993 IPR000225 GO:0005515
Psa3g1220 1168 SMART arm_5 994 1034 IPR000225 GO:0005515
Psa3g1220 1168 SMART arm_5 1075 1115 IPR000225 GO:0005515
Psa3g1220 1168 SMART arm_5 912 952 IPR000225 GO:0005515
Psa3g1220 1168 SUPERFAMILY ARM repeat 883 1155 IPR016024 -
Psa3g1220 1168 MobiDBLite consensus disorder prediction 416 436 - -
Psa3g1220 1168 ProSiteProfiles U-box domain profile. 268 342 IPR003613 GO:0004842|GO:0016567
Psa3g1220 1168 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 923 965 IPR000225 GO:0005515
Psa3g1220 1168 PANTHER U BOX DOMAIN-CONTAINING 828 1163 - -
Psa3g1220 1168 PANTHER U BOX DOMAIN-CONTAINING 39 408 - -
Psa3g1220 1168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 343 IPR013083 -
Psa3g1220 1168 MobiDBLite consensus disorder prediction 382 436 - -
Psa3g1220 1168 SUPERFAMILY RING/U-box 267 344 - -
Psa3g1220 1168 Coils Coil 591 611 - -
Psa3g1220 1168 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1046 1087 IPR000225 GO:0005515
Psa3g1220 1168 MobiDBLite consensus disorder prediction 400 414 - -
Psa3g1220 1168 CDD RING-Ubox_PUB 273 315 IPR045210 -
Psa3g1220 1168 Pfam Armadillo/beta-catenin-like repeat 953 992 IPR000225 GO:0005515
Psa3g1220 1168 Pfam Armadillo/beta-catenin-like repeat 914 951 IPR000225 GO:0005515
Psa3g1220 1168 Pfam Armadillo/beta-catenin-like repeat 998 1033 IPR000225 GO:0005515
Psa3g1220 1168 Pfam U-box domain 269 340 IPR003613 GO:0004842|GO:0016567
Psa3g1220 1168 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1005 1047 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1220 Psa-Chr3 111111034 111116697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1220 229 357 U-box Gene Family AT2G23140 46.512 1.54e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1220 - - mtr:MTR_7g097020 654.825