Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1216 ATGTTAGGGGAAGTGCAACTTCAACCTCCACCTATTCAGCAAAACTCCAGTGATTCCGATCCTTTACTCGGTCATAAAGACGAGGTTGAAGCTGATGACTCCCCTGGAAGTTCTACCGAGGTTATGAATCAGGAGGATGTTGAAGCTGGGTTACTCCCTTGTTGTCGAATTTGCCTAGAAACTGATTCTGATCCTGAGGATGAATTGATATCTCCATGCATGTGCAAAGGAACCCAGCAGTTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTTTCACACTGCACCACCTGCAAAACCAATTTCATCAGATGA 336 0.4524 MLGEVQLQPPPIQQNSSDSDPLLGHKDEVEADDSPGSSTEVMNQEDVEAGLLPCCRICLETDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKTNFIR* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1216 111 SUPERFAMILY RING/U-box 53 109 - -
Psa3g1216 111 MobiDBLite consensus disorder prediction 1 42 - -
Psa3g1216 111 CDD RING_CH-C4HC3_MARCH 55 106 - -
Psa3g1216 111 ProSiteProfiles Zinc finger RING-CH-type profile. 47 111 IPR011016 GO:0008270
Psa3g1216 111 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 109 - -
Psa3g1216 111 Pfam RING-variant domain 55 105 IPR011016 GO:0008270
Psa3g1216 111 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 109 - -
Psa3g1216 111 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 111 IPR013083 -
Psa3g1216 111 SMART ringv_2 54 106 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1216 Psa-Chr3 110928710 110930355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1216 1 109 C3H Transcription Factor Family AT1G11020 66.102 5.57e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1216 - - gmx:100782178 195.282