Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa3g1177 ATGGATAAAGATATGCCTATCATGAATGGCGTTGAGGCAACGAAGGAACTTCGTGCGATGGGAATTCGTAGCACTATCGTTGGAGTGTCATCACATTCCATGGAAGAGGAAATAGTCAAGTTTATGGAAGCTGGACTAGACGAGTATCAAGAGAAGCCTTTGAACAAAGTGAAACTTAGTTCTATTCTTGACAAGATCAAACACAATCTCATATCCAAGTGA 222 0.4054 MDKDMPIMNGVEATKELRAMGIRSTIVGVSSHSMEEEIVKFMEAGLDEYQEKPLNKVKLSSILDKIKHNLISK* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa3g1177 73 Pfam Response regulator receiver domain 1 63 IPR001789 GO:0000160
Psa3g1177 73 Gene3D - 1 73 - -
Psa3g1177 73 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 1 70 - -
Psa3g1177 73 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 70 - -
Psa3g1177 73 CDD REC_hyHK_CKI1_RcsC-like 1 63 - -
Psa3g1177 73 ProSiteProfiles Response regulatory domain profile. 1 67 IPR001789 GO:0000160
Psa3g1177 73 SUPERFAMILY CheY-like 1 67 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa3g1177 Psa-Chr3 106754133 106755026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa3g1177 1 63 Response Regulator Gene Family AT3G04280 51.562 1.91e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa3g1177 Response_reg 9.1e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa3g1177 - - rcu:8262779 108.227